Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5156 105 1e-17 >seq5156 Length=389234 Score = 105 bits (116), Expect = 1e-17 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| | || |||| |||||| || || |||| Sbjct 233106 CCTGCTTCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGT 233165 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATA 204028 | ||||| | |||||||||||| ||||||||| ||||| | || |||||||| |||| | Sbjct 233166 GGATGTTTAAAGACTGGCTTTGATCGATGAAA-GCGCCTCTCTCGGCGGCCATCTTGAGA 233224 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | |||||||| || || |||||||| ||||| Sbjct 233225 ACAGTCTTCTGAGAGATTTCCCACACAGTCTT 233256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791505020175520