Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq8072 140 8e-28 seq186778 105 2e-17 seq11875 98.7 2e-15 seq111151 93.3 1e-13 seq6838 93.3 1e-13 seq11124 89.7 1e-12 seq9155 84.2 5e-11 >seq8072 Length=1211495 Score = 140 bits (154), Expect = 8e-28 Identities = 163/219 (74%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || || || || ||||||||| ||| ||||||||||| |||||| Sbjct 11713 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTA 11654 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCG-AAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||||||||| || ||| ||||| || | |||||| || ||| |||||| Sbjct 11653 CGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCC 11594 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| ||| || ||| | ||||| | ||| || || | Sbjct 11593 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAG 11534 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||||| || || ||||| ||||| || Sbjct 11533 GGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 11495 >seq186778 Length=737 Score = 105 bits (116), Expect = 2e-17 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| || || || ||||| |||||||||||| ||||||||||| |||||| | Sbjct 392 GAAGTCTCAACACCAGATGAAGAGTGAACTCCTTTTGGATGTTGTAGTCAGACAAAGTAC 451 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 | ||||||||||||||| | | |||| | || | |||||| || ||| |||||||| Sbjct 452 AGCAATCTTCCAGCTGCTTGTCAGTGAAGTTCAGCCTCTGCTGATCGGGAGGAATTCCTT 511 Query 199530 C 199530 | Sbjct 512 C 512 >seq11875 Length=615414 Score = 98.7 bits (108), Expect = 2e-15 Identities = 94/119 (79%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| || || | || || ||||| ||||||| ||||||||||| |||||| Sbjct 50179 CGAAGTCTCAACACCAGATAAAG-GTGGACTCTTTTTGGATGTTGTAGTCAGACAAAGTA 50121 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||||||| |||| || |||||||| || | ||| || || ||| |||||| Sbjct 50120 CGGCCATCTTCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGTTGATCAGGAGGAATTCC 50062 >seq111151 Length=252830 Score = 93.3 bits (102), Expect = 1e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 199441 CTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 199500 |||||| | ||||||||||| ||||| | |||||||| ||||| || | |||||| Sbjct 126117 CTTTTGAATGTTGTAGTCAGAGAAAGTAAGGCTATCTTCCACTTGCTTACCAGGGAAGAT 126058 Query 199501 GAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTC 199560 || | |||||| || | | ||||||| || ||||||||||| ||| | ||| Sbjct 126057 CAGCCTCTGCTGATCAGTAGGAATTCCTCCTTTGTCCTGAATCTTGACCTTTATATTTTC 125998 Query 199561 GACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAA 199620 | | ||||| | || || || | | |||| || || ||| | ||||| |||||||| Sbjct 125997 TATAGAGTCTGAGGGTTTAACTTCAAGCATGATAGTTTTCCCCCTAAGAGTCTTCACAAA 125938 Query 199621 AATTTG 199626 ||| || Sbjct 125937 AATCTG 125932 >seq6838 Length=575710 Score = 93.3 bits (102), Expect = 1e-13 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||||||||| |||||| | ||||||||||| ||||| || ||||||| Sbjct 406463 CCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGTTGCTTGCCAGCGAAGA 406404 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | |||||| || ||| ||||||| Sbjct 406403 TCAGTCTCTGCTGATCAGGAGGAATTCCT 406375 >seq11124 Length=316893 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 11/216 (5%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || |||||||||| | |||||| |||| | ||| ||||| Sbjct 73973 AGGACCAGGTGCAGGGTGAACTCCTTTTGCATGTTGTAATCAGAAAGAGTGTGGTCATCT 73914 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTC-------CGGAAAAATTCCTTC 199530 ||||||||||| || || || ||||| | |||||| || || | || || || Sbjct 73913 TCCAGCTGCTTGCCTGCAAAAATGAGTCCCTGCTGCTCTGTGTATGGGGCATATGCCCTC 73854 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | ||||| | ||| | |||||| || |||||| | | |||| | || | || Sbjct 73853 TTAATCCTGGACCTTGTCTTTCACG----TGATGGTGTCACTGGGTTCTGCCTCTAGGGT 73798 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || | || |||||||| ||||| Sbjct 73797 GATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTG 73762 >seq9155 Length=358325 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| | ||| | ||| || |||| ||||| ||||| || ||| ||||| Sbjct 307798 AGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCC 307739 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| || || || | |||||||| || || ||||| || Sbjct 307738 TCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 307679 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || || | |||||| | | | || || | || || ||| Sbjct 307678 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTC 307619 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || |||||||| || || Sbjct 307618 TTGCCCGTCAGGGTCTTCACAAAGATATG 307590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173374434195214