Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9155 111 2e-19 seq77463 109 6e-19 seq8072 95.1 1e-14 seq6003 91.5 2e-13 >seq9155 Length=358325 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| ||||| || ||| || ||||| |||| ||| || || || | | Sbjct 307802 ACGAAGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCC 307743 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||||||||| ||||||| | |||||||| | || | || ||||| Sbjct 307742 ATCCTCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTT 307683 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| ||||| || | | ||||| || | | || || | || || Sbjct 307682 GTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAAT 307623 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||||||||| || || |||||||| ||||| Sbjct 307622 GGTCTTGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq77463 Length=3863 Score = 109 bits (120), Expect = 6e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| |||| || ||| || ||||||||||| || || |||||| | | || || Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||| || || || || || | | ||||||||| | | | | ||| || ||| | Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| || ||| ||||| || | ||||| |||| |||||||| ||| Sbjct 371 ATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTG 430 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || || || || || |||||||||||||||||| Sbjct 431 CCAGTTAGGGTCTTCACAAAGATTTGCATTTTG 463 >seq8072 Length=1211495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||||||||| | || ||||||| |||| |||||||| || | ||| || | || Sbjct 11705 CAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGGCCATC 11646 Query 46441 GTCGAGCTGCTTGCCGGCG-AATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 46499 || ||||||||||| ||| || |||| | |||||| || | || | | ||||| | Sbjct 11645 TTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTCCTTAT 11586 Query 46500 CCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGG 46559 || |||||| ||||| | | | ||||| | ||| || || | ||||||| Sbjct 11585 CCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGTGATGG 11526 Query 46560 TTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || || || ||||| Sbjct 11525 TTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq6003 Length=190268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/240 (69%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | | | ||||| | ||| | |||| |||| ||| ||| || ||||| |||| Sbjct 5781 ATTAATAGTCACCTCTGAGACGGAGGACCACGTGCAGGGTAGACTCTTTCTGGATGTTGT 5722 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCT-GG 46477 | | ||| |||||||| | || || ||||||||||| || || || |||| | || Sbjct 5721 AATTGGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAACAT-----GCTGGTCGG 5667 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTC 46537 || || || ||| || ||| |||||| ||||| || | | ||||| || Sbjct 5666 GGGGTGGGAGTGCCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTG 5607 Query 46538 GATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | ||||| || |||||||| |||| ||||| | || || ||||||||||||||| Sbjct 5606 GGCTCCACCATCAGGGTGATGGTCTTGCTGGTCAGGGACTTCACGAAGATTTGCATTTTG 5547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562643658993840