Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15565 140 3e-28 seq174228 104 2e-17 seq8072 98.7 1e-15 seq77463 86.0 6e-12 seq6003 84.2 2e-11 >seq15565 Length=372695 Score = 140 bits (154), Expect = 3e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| ||||| || || ||||| || || || || || || ||||| ||||| || Sbjct 363909 ACCAGGTTTTCATTAACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATA 363850 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCT-CCCAGTCGCGCGTGTCCTTGGACAGGTCCAC 133397 ||||| | ||||| | |||| ||||| |||||| | |||||||||| |||||||| Sbjct 363849 AAATGTCTCTCGTCGGGTTTCA-GCGCTTCCCAGTGTTGAATGTCCTTGGAAAGGTCCAC 363791 Query 133398 CTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATA 133457 |||||| | ||||| || || ||||||| ||| |||||||| ||| || || || Sbjct 363790 CTCCTCAGCCGTCCAGAAGGAGGCCTCGGTTTTCTTGTACATCTGCCAGATATCATGGTA 363731 Query 133458 TTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 || |||||||| || || || |||||||| ||||| | || || ||||| Sbjct 363730 TTCGATGGGAAAGATAACGAAGCGGCGGGGATTTTCTCTCAGCAAGGGCTC 363680 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| ||| || |||||| || || | ||| ||||| || || ||||| | Sbjct 366573 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366514 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 ||||||| ||||| | || ||| ||| || ||||||| || || || || || || | Sbjct 366513 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 366454 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 |||| | || || || | ||||| |||||| ||||||||||||| ||||| |||| Sbjct 366453 CCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGG 366394 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAA 133136 |||| | ||| || || ||||| || || || || || || Sbjct 366393 CCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAA 366354 >seq174228 Length=3070 Score = 104 bits (114), Expect = 2e-17 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 133214 TGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAAC 133273 |||| ||||| ||||| || || || || ||||| || | |||||||| || ||| Sbjct 1431 TGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACTAGTACTTCTTG-GCTAAAG 1373 Query 133274 -GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGC 133332 |||| ||||| ||||| ||||| ||||| || || | || || || ||||| ||||| Sbjct 1372 AGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGTAGCAAAGAAAGCCAGGACGTGA 1313 Query 133333 TTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGG 133392 || | ||| | |||||| |||| ||||| | | | | | |||||||| ||| Sbjct 1312 GAAATAACATGTCTCTCGTTCAGTTTCA-GCGCTTCTAATGTTGGATATCCTTGGAAAGG 1254 Query 133393 TCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 || || ||||| | ||||| || || ||||||||||| || Sbjct 1253 TCTACTTCCTCAGCCGTCCAGAAGGAGGCCTCGGCTTTCTT 1213 >seq8072 Length=1211495 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| |||||||||||| |||| || || || Sbjct 11492 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTG 11551 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| || || || |||||||| | || || Sbjct 11552 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 11611 Query 38364 CAGCGGCTCAT-TTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || || ||| ||||| |||||||| || | || || | |||||||| Sbjct 11612 CAGAGGCTGATCTTGCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 11671 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| |||||| | || || ||| ||||| || Sbjct 11672 CATCCCAAAGGAGTCCACCCTTCATCTGGTGTTG 11705 >seq77463 Length=3863 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || || || || || ||||| |||||||| | || || || || Sbjct 462 AAAATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACACTGGAGGTGGATCCC 403 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | || | | | || | || |||| || ||||||| || || | ||| Sbjct 402 AGTGACACCATGGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCGCCCCTGAC 343 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| | ||||| | || || |||||| |||| || | | ||| ||| || ||| Sbjct 342 CAGCAGTGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGCCACACTCTCTCTGATTAC 283 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 || ||||| || || | || ||||| |||| || Sbjct 282 AATATCCAGAAAGAGTCCACCCTGCACCTGGTCCT 248 >seq6003 Length=190268 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || | || || |||| ||||||||| | || ||| || Sbjct 5548 AAAATGCAAATCTTCGTGAAGTCCCTGACCAGCAAGACCATCACCCTGATGGTGGAGCCC 5607 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || |||||||| | |||| || | Sbjct 5608 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGGCACTCCCACCCCC 5667 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 | || | || ||| || ||||| |||||||| || | ||||| ||| | | ||| Sbjct 5668 CGAC--CAGCATGTTT--GCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCCAATTAC 5723 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 |||||||| || || | || ||||| |||| || ||| | ||||| Sbjct 5724 AACATCCAGAAAGAGTCTACCCTGCACGTGGTCCTCCGTCTCAGAGG 5770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497876744257280