Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4832 111 6e-19 seq10737 98.7 4e-15 seq6831 87.8 7e-12 seq8072 86.0 2e-11 >seq4832 Length=762459 Score = 111 bits (122), Expect = 6e-19 Identities = 195/284 (69%), Gaps = 9/284 (3%) Strand=Plus/Minus Query 451319 GATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGAT 451378 ||||| || || | || ||| | ||| ||||| || |||| | || || ||||| ||| Sbjct 529485 GATGCTGTGATCAGAGTCCCCACCTATCTCAATAATTCACAGTGACAGGCCACTAAGGAT 529426 Query 451379 GCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 || || || || ||||| ||||||| |||| | | |||| |||||||||||| ||||| Sbjct 529425 GCTGGCCAGATAGCTGGGCTAAATGTACTTCAAGTGATTAGTGAACCTACAGCTGCTGCC 529366 Query 451439 CTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGAT 451498 || | |||| || ||| | || | ||||||||| ||| || | |||| Sbjct 529365 CTGGTGTATGATCT-GGACA--------AATCTGAAGAAAAAGTCATTGCTGTGTATGAT 529315 Query 451499 TTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTA 451558 || ||||| ||||| ||||| |||| | || |||| | || || || || | || Sbjct 529314 TTAGGTGGTGGAACCTTTGATATTTCTATCCTGGAAATTCATGAAGGCGTGTTCAAGGTG 529255 Query 451559 AAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 || ||||| || ||| || |||| |||||||| |||| Sbjct 529254 AAATTCACCAACGGGGATGCTTCCTTAGGCAGTGAAGATTTTGA 529211 >seq10737 Length=286749 Score = 98.7 bits (108), Expect = 4e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 451346 TTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTT 451405 ||||||||| | || ||||| ||||| || ||||| ||| |||||||||| | ||||| Sbjct 38313 TTCAATGATTCTCAGCGGCAGGCAACAAAGGATGCCGGAACTATTGCTGGTCTTAATGTG 38372 Query 451406 CTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAG 451454 ||||||||||| || || || || || |||||| | || ||||| |||| Sbjct 38373 CTTCGAATTATCAACGAGCCGACTGCTGCTGCTATTGCCTATGGGCTAG 38421 >seq6831 Length=712988 Score = 87.8 bits (96), Expect = 7e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 127419 ATATGCTTCCGAAATTTCTTTAAATTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTT 127478 |||||| || | | |||||| |||||| | || ||||||| ||| || | | |||| || Sbjct 17917 ATATGCCTCGGCGACTTCTTTGAATTTTCGCTCTGCTTCTTCTTTATTTTCTGGATTTTT 17858 Query 127479 ATCAGGATGATGTTTAACAGCTAATTTACGGTAAGCTTTTTTAATTTC 127526 ||||||||| ||||| || | ||||||||||||| ||||||| || Sbjct 17857 ATCAGGATGCCATTTAAGTGCCACTTTACGGTAAGCTCTTTTAATGTC 17810 >seq8072 Length=1211495 Score = 86.0 bits (94), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || ||||| || || || || |||||| | | Sbjct 11492 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTG 11551 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 11552 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 11611 Query 391170 CA-ACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || | | | | || | | || || || || |||||||| | |||||| | || || || Sbjct 11612 CAGAGGCTGATCTTGCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 11671 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 || ||||| | || ||||| | || || ||||| Sbjct 11672 CATCCCAAAGGAGTCCACCCTTCATCTGGTGTTGAGACT 11710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1966422075674136