Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq14171 98.7 7e-15 seq10737 93.3 3e-13 seq2669 89.7 4e-12 seq1632 89.7 4e-12 >seq14171 Length=596195 Score = 98.7 bits (108), Expect = 7e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || ||||| ||||| ||||| |||||||| | || || | ||||| Sbjct 513750 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAGGCCGACATTCGCAGAGTTAT 513809 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 513810 TCATTATGGCGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 513869 Query 367113 TGATGGA 367119 |||||| Sbjct 513870 GGATGGA 513876 >seq10737 Length=286749 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| || ||||| |||| |||||||||||| || || || ||||||| | ||| Sbjct 38428 TTCTTATCTAGCCCATAGGCAATAGCAGCAGCAGTCGGCTCGTTGATAATTCGAAGCACA 38369 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 518280 |||||||||||||| |||| ||||| || || || || | || ||||| || || Sbjct 38368 TTAAGACCAGCAATAGTTCCGGCATCCTTTGTTGCCTGCCGCTGAGAATCATTGAA 38313 >seq2669 Length=842545 Score = 89.7 bits (98), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 635439 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCTTA 635498 ||||||| || || |||| |||||||| ||||| ||||| | || | || |||||| Sbjct 546584 AATGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTCTGGCAGTTTCGGGTCTTG 546525 Query 635499 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 635558 ||| |||||||||| | |||||||| || || |||||||||||| | | ||||| Sbjct 546524 GTGTAGTTGGAAGAGACAAATATGGAGTATTTCCTCTTAGAGGAAAAATACTCAATGTAC 546465 Query 635559 GGGATGCTAGTCCTAAA 635575 | || ||| || |||| Sbjct 546464 GAGAAGCTTCTCATAAA 546448 >seq1632 Length=481465 Score = 89.7 bits (98), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 517213 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 517269 ||| ||||| || || || || ||||||| || ||| || | || ||||| Sbjct 161455 ATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTCAGCTGTCACTCG 161399 Query 517270 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 517329 |||||||||||| |||| | ||||| || |||||||| ||||| ||||| | |||| Sbjct 161398 AAGAATACCATTAACATCTATCTCAAAGGTAACTTCAATCTGAGGTACCCCACGGGGAGC 161339 Query 517330 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 517389 || ||||| || || || |||||| |||||| || ||| ||||| || | ||| Sbjct 161338 TGGAGGGATTCCAGTCAGATCAAATGTACCCAGAAGATGATTGTCTTTTGTTAGGGGTCG 161279 Query 517390 TTCACC 517395 |||||| Sbjct 161278 TTCACC 161273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3762598642264852