Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq13748 300 2e-76 seq9090 104 3e-17 >seq13748 Length=543502 Score = 300 bits (332), Expect = 2e-76 Identities = 839/1271 (66%), Gaps = 36/1271 (3%) Strand=Plus/Minus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 || ||||| || |||||| ||| | ||||||||| | ||| || ||||| | ||| Sbjct 106181 GGGATCGTGGTGTTTCTCTTAATGAGCGGGGTCATGACACCGCCAGCTGTTTCAATGCCA 106122 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAACAGG---TCTTGAACAGATTCGTTCCCTTCA 7012 || |||| ||| |||||||| ||||||||| || || ||| ||| | | || Sbjct 106121 AGCGACAAAGGAGTCACGTC---GAGTAACAGCAGATCCTGCACA--TTC-TCCGATTTG 106068 Query 7013 --CCCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 |||| | || || || || || || | || ||||| || |||||||| |||||||| Sbjct 106067 TCCCCGATGAGGATAGCCGCCTGCACAGCGGCGCCGTAGGCCACCGCCTCGTCGGGGTTG 106008 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || ||||| || || ||||| || ||||| | | | || || || ||| Sbjct 106007 ATGCTCTTGTTCAGCTCCTTGCCGTTGAAGAAATCCTGCAGGAGCTTCTGGATCTTAGGG 105948 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || || |||| || || || | | | || || | ||| | Sbjct 105947 ATGCGGGTGGAGCCGCCCACCAGCACTATCTCCTGGATCTGGCCCTTGTCCAGCTTGGCA 105888 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAGT 7246 || || || | ||||| || || |||| | | | ||||| | ||| || Sbjct 105887 TCGCGCAGAGCCTTTTCCACCGGCTCCAGGGTCCCT---CGGAAGAGGTCGGCGTTGAGC 105831 Query 7247 TCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||||| || || || ||||| ||||| || |||||||| ||||| ||||| | ||| || Sbjct 105830 TCCTCGAAGCGGGCGCGGGTGATGGACGTGTAGAAATCCACGCCCTCGTAGAGCGAGTCG 105771 Query 7307 ATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTT 7366 || || ||| | | || | | ||| | || ||||| |||||||| || || || Sbjct 105770 ATCTCGATGCTGGCCTGCGTGGACGAGCTCAGGGTGCGCTTGGCGCGCTCGCAGGCAGTG 105711 Query 7367 CGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAAC 7426 || | || || | || ||| ||| ||| || ||||| ||||| || || ||| Sbjct 105710 CGCAGTCGGCGCACTGCGCGCTTGTTGGGCCCAATGTCCTTCTTGTGTTTGCGCTTGAAC 105651 Query 7427 TCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCC 7486 || || | | ||| | | | | ||||| ||||||||||||| ||| || || Sbjct 105650 TCCTCCGCCAGGTGGCTGACCATACGATTGTCGAAGTCTTCACCACCCAGGTGGGTGTCG 105591 Query 7487 CCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAAC 7546 || || || | || || || ||||| || | || ||| | | | || || || || Sbjct 105590 CCAGCCGTGGACTTCACCTCGAAGATGCCATCCTCGATGGTCAGGATGGACACGTCGAAG 105531 Query 7547 GTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTTA 7600 || || || |||||||| || ||||| |||||| | ||| | | | |||||| Sbjct 105530 GTGCCCCCGCCCAGGTCGAAGATGAGCACGTTCTTCTCGCCACCCGCGCAGCCCTTCTTA 105471 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAG 7659 || || || || ||||| ||||| ||||| || || || || || || || ||| || || Sbjct 105470 TCCAGGCCATAGGCGATGGCCGCTGCCGTGGGCTCGTTGATGATGCGCAGCACA-TTGAG 105412 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 ||| | ||||| |||| ||||| || || || || ||||| ||||| || ||||| || Sbjct 105411 GCCCGTGATAGTGCCCGCGTCTTTGGTGGCCTGGCGCTGCGAGTCGTTGAAATAGGCGGG 105352 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || | ||| ||| | || || || || || | ||| ||||| || ||||| Sbjct 105351 GACGGTGATGACGGCGCTCTGCACCTTGCCCCCCAGGTAGGCTTCGGCGATCTCCTTCAT 105292 Query 7780 TTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAA 7838 || || || ||||| || |||||||| || | | | | || || | || || ||| Sbjct 105291 CTTTGTGAGGACCATGGAGGAAATCTCCTCCG-GGAAGAAAGTCTTTATCTCCCCCTTAT 105233 Query 7839 AATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTT 7898 | || || | | |||| || | || | || | || | ||| ||| | | Sbjct 105232 ATTCTACCTGCACTTTGGGCTT---CCCACCCTCGCTCACCACTCTGAACGGCCAGTGCT 105176 Query 7899 TCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCA 7957 |||| || || ||| || | |||| ||||| | ||||| || | ||| || || Sbjct 105175 TCATGTCCGACTGCACC-GTGGCGTCCTCGAACTTCCGCCCGATCAGCCTCTTGGCGTCG 105117 Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 || | ||||| ||||||||||||| ||||||||| || ||||| ||||| || || Sbjct 105116 AAGATGGTGTTCGTGGGGTTCATGGCCACTTGGTTCTTGGCGGCGTCGCCGATGAGGCGC 105057 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | || || || || ||||| ||||| || || || || |||||||| || Sbjct 105056 TC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGCG 105000 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || || || || | | | ||| |||| || ||||| || || || || || | || Sbjct 104999 ATGATCTCCACCTTGCCATGTTGGAAGACCCCCACGCAGGAGTATGTGGTGCCCAGGTCG 104940 Query 8138 ATACCGATTGC 8148 || ||||| || Sbjct 104939 ATGCCGATGGC 104929 >seq9090 Length=397034 Score = 104 bits (114), Expect = 3e-17 Identities = 247/372 (66%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || || || || || ||||| || | ||||||||| | | | Sbjct 97925 GTCATCACGCCGCCCGCTGTCTCCAGGCCCAGCGACAGCGGCGCCACGTCCAACAAAAGC 97866 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | ||||| || ||| |||||| |||| || || || ||||| | || || Sbjct 97865 AAATCTTGTACTTTTTCAGATTTGTCACCCATTAAAATAGCTGCCTGGACTGCAGCTCCA 97806 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || |||||||||||||| || || |||| || || ||| || ||||| || || Sbjct 97805 TAGGCCACCGCCTCATCGGGATTGATACTTTTGTTGAGATCTCGTCCATTAAAGTAGTCT 97746 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | || | || ||||| || ||||| || || || | ||| || |||| Sbjct 97745 TGAAGTAGCTTCTGCACCTTGGGGATGCGCGTCGAGCCGCCCACGAGAACAATGTCATGG 97686 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACAT 7222 | ||| | || || ||||| | ||| ||||| | || || ||||| |||| | | | Sbjct 97685 ATTTTAGCCTTGTCCATCTTGGCGTCCCGAAGAGACTTCTCCACAGGCTCCAGGGTGCCT 97626 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 || || | || |||| || ||||| ||||| | ||| ||||| || ||||| Sbjct 97625 CTA---AAGAGATCTGCGCACAACTCTTCAAACCGTGCTCTGGTGATGGACGTGTAGAAG 97569 Query 7283 TCAACGCCGTCG 7294 |||| ||| ||| Sbjct 97568 TCAATGCCCTCG 97557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632217207003280