Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq77463 116 8e-21 seq9155 114 3e-20 seq16375 91.5 3e-13 seq11875 89.7 1e-12 >seq77463 Length=3863 Score = 116 bits (128), Expect = 8e-21 Identities = 155/214 (72%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || ||||||||||| | ||||| |||||||| Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||| || ||||| ||||| |||| || ||||| || | ||| | ||||| || || Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || |||||| ||||| |||||||| ||| ||||| || || || | ||| Sbjct 371 ATCTTGGCCTTGACATTCTCCATGGTGTC---ACTGGGATCCACCTCCAGTGTGATGGTC 427 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || || | || || || || | |||||||| Sbjct 428 TTGCCAGTTAGGGTCTTCACAAAGATTTGCATTT 461 >seq9155 Length=358325 Score = 114 bits (126), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| | ||||| |||||| || || |||| || | || || ||||| || Sbjct 307795 ACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCCTCC 307736 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || |||| ||| ||||| || || |||||||| |||||||| Sbjct 307735 AGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGG 307676 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || || |||||| ||||||||||||| | | ||| || ||||| |||| |||| Sbjct 307675 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTT--GACCTCAAGAGTAATGGTCT 307618 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || |||| || || || || | ||||| Sbjct 307617 TGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq16375 Length=211985 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/141 (75%), Gaps = 9/141 (6%) Strand=Plus/Minus Query 194946 GGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGC 195005 ||||||||| || || |||||||| | |||||| | ||||||| | |||||| || || Sbjct 123805 GGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGTCATCTTCCAACTGCTTGCCAGC 123746 Query 195006 GAAGATAAGTCGTTGTTGGTC-TGGA-----GGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||| |||| || ||||| ||| || ||||| ||||| || ||||| || Sbjct 123745 AAAGA---GTCGCTGCTGGTCGTGGGCAGAGGGGATGCCCTCTTTATCCTGAATCTTGCC 123689 Query 195060 CTTGACGTTCTCAATGGTGTC 195080 |||||||||||| |||||||| Sbjct 123688 CTTGACGTTCTCGATGGTGTC 123668 >seq11875 Length=615414 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || | ||| |||||||||||||| || ||||| || | | ||| | Sbjct 50176 AGTCTCAACACCAGATAAAG-GTGGACTCTTTTTGGATGTTGTAGTCAGACAAAGTACGG 50118 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| ||| |||| || |||||||| || | ||||| || |||||||| || Sbjct 50117 CCATCTTCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGTTGATCAGGAGGAATTCC 50062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1104261169402614