Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15565 159 4e-34 seq5311 150 2e-31 seq174228 95.1 1e-14 seq5156 84.2 2e-11 >seq15565 Length=372695 Score = 159 bits (176), Expect = 4e-34 Identities = 171/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | || || |||||||| | |||||||||||||| | ||| | Sbjct 366573 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366514 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||| ||||| || ||||| || || ||||| | Sbjct 366513 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 366454 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | | ||||||||| | || || || | ||||| ||| ||||| || | Sbjct 366453 CCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGG 366394 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||||||||| ||||| ||||||||||| |||| ||| || ||||| Sbjct 366393 CCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||| |||||||||||||| |||||||| || ||||| || || | || || ||| Sbjct 363909 ACCAGGTTTTCATTAACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATA 363850 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACT 19464 |||||| | || || | | | | | ||| | | ||| || || || | || || Sbjct 363849 AAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATGTCCTTGGAAAGGTCCACC 363790 Query 19465 TCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATAT 19524 || ||| | ||||| || || ||||| | ||| || ||||| | ||| |||||| | ||| Sbjct 363789 TCCTCAGCCGTCCAGAAGGAGGCCTCGGTTTTCTTGTACATCTGCCAGATATCATGGTAT 363730 Query 19525 TGTATAGGAAATATAACAAA 19544 | || ||||| ||||| || Sbjct 363729 TCGATGGGAAAGATAACGAA 363710 >seq5311 Length=191600 Score = 150 bits (166), Expect = 2e-31 Identities = 225/312 (72%), Gaps = 17/312 (5%) Strand=Plus/Plus Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 || || ||||| |||| ||||| ||||| || || || || || |||||||| | ||| Sbjct 42069 GCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCCA 42128 Query 19024 GGCATCAGTCCTC-ttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 ||||||||||| | |||| || | ||||||||| || |||| | ||| | ||||| || Sbjct 42129 GGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGAT 42188 Query 19083 ACCTTCTACTGCTGCAAAAGCAAC-TAGTCTTTCTCCATAACTAGCATCATTATTATGAA 19141 |||| | || |||| || || | || ||||||||| ||| || || | || Sbjct 42189 CGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCAA 42248 Query 19142 TCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAA 19201 ||||| |||| || | |||||||||||||| | ||| |||||| |||| |||| ||| | Sbjct 42249 TCCATCTCAGGACCTAGTCAGCCTTCTTTTTCA-ACAAGGCATTATCTCAATAGCATTGA 42307 Query 19202 ATAGATACATACGCTCATCTGT---ATCTTTAACATATGCATCTATCAAT----AAACTG 19254 | || | |||| ||| ||| | ||||||| ||| | || ||||| | |||| Sbjct 42308 AGAGTT--ATACCCTC-TCTTTGAAATCTTTA----ATGTAACTGTCAATGAGGAGACTG 42360 Query 19255 TACATTTCTGAA 19266 |||||||| ||| Sbjct 42361 TACATTTCAGAA 42372 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/288 (67%), Gaps = 10/288 (3%) Strand=Plus/Plus Query 18614 AAAAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATTT 18670 |||| ||| ||||||| | ||||||||||||| | ||| ||| ||| ||||| | Sbjct 41636 AAAAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCA-----CCCATAT 41690 Query 18671 --TTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 | |||| | | | |||| || |||||||| || | || || |||| ||| || Sbjct 41691 CCTCAGATACTTGCCCACTCGCTTCTCAAAGAAGTTTATCTTCCCATCTAGTGAATTATT 41750 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| || ||||| ||||||| ||| || | || || |||| |||| || | | Sbjct 41751 TTCCACGAAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGGAT 41810 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || || || || || |||| || || ||||||| || |||| || || | Sbjct 41811 AAGCCTGTCTGCCACGAATTCGATGTACTGCTTCATCAGGGTTCAGCTCATCCCAATAAG 41870 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 || ||||| || ||||| | ||||| || || ||| | ||||||| Sbjct 41871 CTTCACAGGCAGGGCATCCATGAGAAACTCCTGCTCTCTCCTTACTGC 41918 >seq174228 Length=3070 Score = 95.1 bits (104), Expect = 1e-14 Identities = 176/260 (68%), Gaps = 15/260 (6%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| ||||| |||| ||| ||||| || || | || ||||||||||| | Sbjct 1926 CAGGCAAAGTCACAGTGTAAACCCAGATCTCTGCTAATAAGCTCGTTAGAAAATGTAAGG 1867 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 ||||||||||||| ||| || | ||| |||| || ||||| || |||| |||| Sbjct 1866 TCAGGCATCAGTCCCGGTTTCTTGAGCCATTATATTGACGCAAAAGAGCCAG---AGAAG 1810 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 | | ||| | || ||||| || || | || ||||||||| |||| || | | | Sbjct 1809 GTCGCATCTGCAGCAGCAAAGGCCACAAATCATTCTCCATAGGTAGCCTCTTGGTCCCCA 1750 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTC------------TTTTTTACACATGGCATTGTC 19188 ||||| ||| ||||| || ||| ||||| ||||| ||||||||| Sbjct 1749 ATCCAACGCAGGGCCCAGGGAGTTTTCTGGGGTTTTTTTTTTTTCACACAAGGCATTGTC 1690 Query 19189 TCTATAGAATTAAATAGATA 19208 || |||| ||| || || || Sbjct 1689 TCAATAGCATTGAAGAGTTA 1670 Score = 95.1 bits (104), Expect = 1e-14 Identities = 193/283 (68%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 18616 AAATCAACATCCAAAGAAAAAGAATTCTCTTC---ATTAGAATTCATTACTCCCATTTTT 18672 || ||| ||||||||| ||||||||||||| | ||| ||| || || ||||| | Sbjct 2351 AAGTCAGCATCCAAAGTAAAAGAATTCTCTGCTGTATTTGAA---ATAACCCCCATCCTC 2295 Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| ||| | | | || ||||||| || || || || |||| ||| || |||| Sbjct 2294 TGATACTCGCCCATTTGCTTCACAAAGAAGTTGGTCTTCCCTTCTAGTGAATTATTTTCC 2235 Query 18733 ATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGT 18792 || || ||||| ||||||| ||| | || || || |||| |||| || | | || Sbjct 2234 ATTAAGTCAAACGGATTTTCTACTCTTTAAATCTTGCTGAACCCTAGCTCCAGGATAAGC 2175 Query 18793 CTATCCGCTACAAATTTAATATA-TGTGTTCATCATATCACAATTCATTCCTATTAATTT 18851 || ||||| | |||| || || ||| ||||| | || |||| || || | || Sbjct 2174 CTGTCCGCCATGAATTCGATGTACTGT-TTCATTAGGGTGCAGCTCATCCCGATGAGCTT 2116 Query 18852 AACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || || ||| ||||| | || ||||| ||||| Sbjct 2115 CACAGGCAGGGCCTCTAGGAGAAACCCCTGCTCTATCCTTACT 2073 >seq5156 Length=389234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | || || || | || || ||||| || || || || || || Sbjct 236487 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 236546 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | ||| ||||||||||| || |||||||| | |||| | ||| || Sbjct 236547 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 236606 Query 47448 TTTCTTACTCCATA 47461 || |||| ||||| Sbjct 236607 TTCCTTATACCATA 236620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559528425500880