Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4439 116 3e-20 seq10737 100 2e-15 seq77463 87.8 1e-11 >seq4439 Length=250575 Score = 116 bits (128), Expect = 3e-20 Identities = 304/459 (66%), Gaps = 6/459 (1%) Strand=Plus/Plus Query 550027 TGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAAC 550086 ||| ||||| | || |||| || || || || ||||||||||| || |||||| |||| Sbjct 126684 TGTGGGTGTCTTCCAGCATGGGAAGGTGGAGATAATTGCCAATGACCAGGGTAACGGAAC 126743 Query 550087 TACTCCATCTTATGTTTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATA 550146 || ||| |||||| | || || || | |||| || |||| ||||| || || | Sbjct 126744 CACACCAAGCTATGTTGCCTTTACTGACATGGAACGATTGATTGGGGATGCTGCGAAGAA 126803 Query 550147 TCAAG--CCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGA 550204 | | | || || || || ||||| || |||||||||| ||| |||| |||||| | Sbjct 126804 TAAGGTTGCAATG--AACCCCACCAAAACAGTTTTTGATGCCAAATGTTTGATTGGACGT 126861 Query 550205 AGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAAT 550264 || ||| ||||| | ||| || | || |||||||| ||||| ||| | | || || Sbjct 126862 AGGTTTCATGATGCTGTTGTACAATCTGACATGAAGCACTGGCCCTTCATAGTGGTGAAC 126921 Query 550265 GTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCA 550324 | | | || | || | | || || ||||| ||| || | | || Sbjct 126922 GATGCAGGTAGGCCCAAGGTCCAAATAGAGTATAAAGGAGAGACAAAAAGCTTCTAATCA 126981 Query 550325 GAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGT 550384 || || | || ||||||||| | || || ||||| | | | ||| ||| ||| Sbjct 126982 GAGAAAGTGTCCTCTATGGTTCTGATTAAGATGAAGGAGATTG-CAGAAGTTTATCTGGG 127040 Query 550385 CAAGA-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCA 550443 |||| ||||| |||| | | || || ||||| | || ||||| || || | || Sbjct 127041 GAAGAGGGTTACCAATGCTGCGGTCACAGTGCCAGCCTTCTTCAATGATTCTCAGTGGCA 127100 Query 550444 AGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGT 550482 | || |||||||||||| ||||||||| || ||||| Sbjct 127101 GGGAACAAAAGATGCTGGAACTATTGCTGGCCTCAATGT 127139 >seq10737 Length=286749 Score = 100 bits (110), Expect = 2e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550424 TTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTT 550483 || ||||| || || || || || || || ||||| ||| ||||||||| |||||||| Sbjct 38313 TTCAATGATTCTCAGCGGCAGGCAACAAAGGATGCCGGAACTATTGCTGGTCTTAATGTG 38372 Query 550484 CTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||||||| || || ||||||||||| |||| ||||| || ||||| Sbjct 38373 CTTCGAATTATCAACGAGCCGACTGCTGCTGCTATTGCCTATGGGCTAGATAA 38425 >seq77463 Length=3863 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||||||| |||| || || || ||||| ||| | | ||| ||||||||||||| ||| Sbjct 238 CCTGAGATGGAGGACCAGGTGCAGGGTGGACTCTTTCTGG--ATATTGTAATCAGAGAGA 295 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || |||||| | |||||||| ||||| || |||| ||||| ||||| | || Sbjct 296 GTGTGGCCATCTTCCAACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATG 355 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 | |||||||| || || || || || ||| || || ||| || || | || || Sbjct 356 TCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGA-TCCACCTC 414 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || || | || || ||||| || || || || || |||||||| Sbjct 415 CAGTGTGATGGTCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4009874586778580