Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq6749 113 6e-20 >seq6749 Length=455800 Score = 113 bits (124), Expect = 6e-20 Identities = 176/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| ||| | | || | ||| |||| ||| |||| | |||| ||| ||||||||| Sbjct 171567 ACTGAGTAACTTAGAAGTTATCAACCACACTCACCTGTTTGAGAACGGGACCTGCGAGAT 171626 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 ||| ||||||||| |||| ||| | || ||| | | ||| || ||| |||||| Sbjct 171627 CCACCTGACCTGTACTGTGGAGAACCCAAATCATACTGCCTCAATCGGGTGGCAGGCCTC 171686 Query 2327 GGGCAAGA-CGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 || || | | ||| || | || || || ||||| |||||||||||| | ||| | Sbjct 171687 AGGAAACATCTCTT-TAGGGGACCCAAATCTCACTGTCTCCTGGGACCCAAAGAATTCCC 171745 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| |||| ||||| ||| || ||| |||| |||||||| ||| || | |||| Sbjct 171746 GTGACCAGAGTTACACCTGCCATGCTCTGAACCCTGTCAGCAATCTGTCTGTCTCTGTCT 171805 Query 2446 CGGCCCAGA 2454 | ||||||| Sbjct 171806 CTGCCCAGA 171814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626394459738320