Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq303837 127 2e-24 seq1985 91.5 1e-13 >seq303837 Length=344 Score = 127 bits (140), Expect = 2e-24 Identities = 130/167 (78%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 29868 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29927 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 83 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 142 Query 29928 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCC-GTCGC 29986 || || || ||||| || || ||||||||||||||||| || || ||||| || |||| Sbjct 143 CACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC 202 Query 29987 TCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | || || || ||||| | || ||||| ||||| || ||||| ||| Sbjct 203 T-ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 248 >seq1985 Length=848755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || ||||| |||||||| |||| || || |||||| | | ||||| |||||| || || Sbjct 212392 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 212333 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || || | ||||| ||||||| |||||| || ||| Sbjct 212332 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 212285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406788724924466