Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq15565 104 4e-17 seq53448 87.8 3e-12 seq5311 87.8 3e-12 seq5156 84.2 4e-11 >seq15565 Length=372695 Score = 104 bits (114), Expect = 4e-17 Identities = 118/152 (78%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 |||| || || | ||| || ||| | || ||||||||||||||||| || ||||| ||| Sbjct 366425 AGAG-GCCACCTATGGAGAACGGGTTGTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCT 366483 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC 25977 || || ||||| | || |||||||||||| | | |||||| ||||| || || ||| Sbjct 366484 CTGGCTCTTTTGCATCAATATTCTGGCTCAAG-AAACGGGGACTGATGCCTGGCCT-TAC 366541 Query 25978 -TTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 |||||||||||||| || ||||| || |||| Sbjct 366542 ATTTTCCAACGAGCTTATTAGCAGAGATGAGG 366573 >seq53448 Length=237101 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| ||||| ||| | || ||| || || ||||| || ||||||| Sbjct 207138 TGGTGGCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCCTTTGCTGCTATCTTCT 207197 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||||||| || ||||| || || || || ||||||||| Sbjct 207198 GGCTGAAGAAGAGAGGCCTCATGCCCGGACT-CACTTTCTCAAATGAACTGATCAGCAGG 207256 Query 26002 GACGA 26006 || || Sbjct 207257 GATGA 207261 >seq5311 Length=191600 Score = 87.8 bits (96), Expect = 3e-12 Identities = 127/173 (73%), Gaps = 5/173 (3%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCG-GCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTC 25917 |||| ||| | | ||| || || | | || || |||| ||||| ||| | ||||| ||| Sbjct 42238 AGAG-GCTTCCTATGGAGAACGAGTTTGTGGCATTTGATGCTGCGGAAGCGATCTTCTTC 42180 Query 25918 AGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTA 25976 ||| | |||| | | || |||||||||||| | | |||||| ||||| || || || Sbjct 42179 TTTGGTCCTTTTGTGTCAATATTCTGGCTCAAGAAAACGGGGACTGATGCCTGGCCT-TA 42121 Query 25977 C-TTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCC 26028 | |||||||||||| | || ||||| || |||||| | ||| | || || ||| Sbjct 42120 CATTTTCCAACGAGTTTATTAGCAGAGATGAGGGTTTACACTGTGACTTCGCC 42068 >seq5156 Length=389234 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 221732 ACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTC 221791 ||||| || ||| ||||||||| || || |||||||| ||||||||||| |||||||| Sbjct 241800 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACACAGGTTGCTGCATTTGATGGTG 241859 Query 221792 CCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCG 221851 ||||||| | || || ||| ||||| | || ||||||||||| | || | Sbjct 241860 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTG 241919 Query 221852 CCAGTCTCCAGCTGAG 221867 || ||||| ||||| Sbjct 241920 CCTGTCTCTGTCTGAG 241935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 924580914724480