Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_019559.1 Length=202946 Score E Sequences producing significant alignments: (Bits) Value seq311925 150 2e-31 >seq311925 Length=381 Score = 150 bits (166), Expect = 2e-31 Identities = 195/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 153745 CCCGCGTCCCTCAGATGCTCGTTGAAAACTA-CACAAGAACCTTTAATTGTAACGTGGCA 153803 || || ||| | ||||| || |||| ||| | || ||||| || ||||| || ||||| Sbjct 61 CCTGCATCCTTAAGATGTTCTCTGAAG-CTATCCCAGGAACCCTTGATTGTGACATGGCA 119 Query 153804 AAAGAAGAAAGCTGTAGGTCCAGAAAATATGGCCACGTATAGCAAAGCCCACGGTGTAGT 153863 || |||||||||||| | |||||||| |||| ||| || ||||||||||| || || || Sbjct 120 GAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAAGCCCATGGAGTTGT 179 Query 153864 GCTTCAGCCCACATATAAAGATAGAATTAATATAACCGAATTAGGTCTTTTAAACAGTAG 153923 | ||||| |||||| ||| || | || || || || | || || | || | || Sbjct 180 AGTCCAGCCTGCATATAGAGACAGGGTAAACATCACTGAGCTGGGACTCTGGAATACAAG 239 Query 153924 TATAACGTTTTGGAATGCAACACTGGATGATGAAGGCTGTTATATGTGTCTGTTTAATAT 153983 || || || ||||| |||| ||||| ||||| ||||| || |||||||| || |||| Sbjct 240 CATCACCTTCTGGAACACAACCCTGGAAGATGAGGGCTGCTACATGTGTCTCTTCAATAC 299 Query 153984 GTTCGGTTCTGGTAAGGTATCGGGAAC 154010 || | |||||| ||| | || || || Sbjct 300 TTTTGTTTCTGGGAAGATCTCAGGGAC 326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 646318575789920