Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4439 127 1e-23 seq10737 93.3 3e-13 seq8072 91.5 1e-12 >seq4439 Length=250575 Score = 127 bits (140), Expect = 1e-23 Identities = 296/441 (67%), Gaps = 4/441 (1%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| || || || ||||||||||||||||| ||||| |||| |||||| |||||| Sbjct 126701 ATGGGAAGGTGGAGATAATTGCCAATGACCAGGGTAACGGAACCACACCAAGCTATGTTG 126760 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | |||||||| | |||| | ||||| |||||||| || || | | |||| || | Sbjct 126761 CCTTTACTGACATGGAACGATTGATTGGGGATGCTGCGAAGAATAAGGTTGCAATGAACC 126820 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | || || |||||||||| ||| | |||||||| |||| ||| ||||| | || Sbjct 126821 CCACCAAAACAGTTTTTGATGCCAAATGTTTGATTGGACGTAGGTTTCATGATGCTGTTG 126880 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATA 474620 | |||||||| ||| || ||||| || | ||| | || | || |||| || | Sbjct 126881 TACAATCTGACATGAAGCACTGGCCCTTCATAGTGGTGAACGATGCAGGTAGGCCCAAGG 126940 Query 474621 TAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 | || | | ||| || || ||| || | | | || || | || || |||| Sbjct 126941 TCCAAATAGAGTATAAAGGAGAGACAAAAAGCTTCTAATCAGAGAAAGTGTCCTCTATGG 127000 Query 474681 TTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGA-AGTAACTGATGC 474738 || | || ||||| | | || || | |||| ||| |||| || || |||| Sbjct 127001 TTCTGATTAAGATGAAGGAGATTGCAGAAGT-TTATC-TGGGGAAGAGGGTTACCAATGC 127058 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 | | || || ||||| | || ||||||||||| | || | ||| |||||||| || Sbjct 127059 TGCGGTCACAGTGCCAGCCTTCTTCAATGATTCTCAGTGGCAGGGAACAAAAGATGCTGG 127118 Query 474799 AAGAATTGCAGGTCTTAATGT 474819 || ||||| || || ||||| Sbjct 127119 AACTATTGCTGGCCTCAATGT 127139 >seq10737 Length=286749 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 474761 TTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTT 474820 || ||||||||||| || || ||||| || ||||| |||| ||||| ||||||||||| Sbjct 38313 TTCAATGATTCTCAGCGGCAGGCAACAAAGGATGCCGGAACTATTGCTGGTCTTAATGTG 38372 Query 474821 TTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || ||||| || || || || || || || |||| ||||| || |||||||| Sbjct 38373 CTTCGAATTATCAACGAGCCGACTGCTGCTGCTATTGCCTATGGGCTAGATAAGAA 38428 >seq8072 Length=1211495 Score = 91.5 bits (100), Expect = 1e-12 Identities = 127/177 (72%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAA-ATAAGACGTTG 480652 || || |||| | ||| | | |||||| || ||||| ||||| || || || | || Sbjct 11671 TTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTG 11612 Query 480653 TTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC 480712 || |||||||||||||||||||| || || ||||| |||||| ||| ||||| || Sbjct 11611 CTGCTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTC 11552 Query 480713 AGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | || ||||| || ||||| || || || ||||| |||||||| || Sbjct 11551 CAAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTG 11495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3252426408761816