Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq6848 273 3e-68 seq701 100 3e-16 >seq6848 Length=162012 Score = 273 bits (302), Expect = 3e-68 Identities = 418/596 (70%), Gaps = 0/596 (0%) Strand=Plus/Plus Query 160437 ACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCC 160496 || |||||||| || ||||| ||||| | || | | | |||||| ||||| || Sbjct 128445 ACCACAAAGTAGGCACTGCCTGAGAAAAGAGGAGTTGTGAGCGGCGGCTGCGCTTTGGCC 128504 Query 160497 TGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATC 160556 || ||||| | || | || | || | | |||||||||||||||||| || | Sbjct 128505 ACCCCCGTGTTCGTCAGCTTCCCGTCGACAACGGTGTGTCGCTTCTTCCACCTTTCCTCC 128564 Query 160557 TTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGC 160616 |||| || ||||| || || || || ||||| | || || || || |||| | Sbjct 128565 TTGTTGGGAGGCATCTTCTCGGTTTCCAGGCTGTTTTCGCCCAGGAATGACTTGAGCTTC 128624 Query 160617 TTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTAC 160676 |||| || || ||||| || || | || ||||| ||||||| | ||| |||| |||| Sbjct 128625 CTGACAATTTCCAGGTTGGTTTTAATAGGGAAGTCCATACCGCAGAGGTTGATCAAGTAC 128684 Query 160677 TTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGG 160736 ||||| || || |||| | || || |||| ||||||| || | || ||||| || || Sbjct 128685 TTCCAGTTTGCACTCATGCTGTACAAGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGA 128744 Query 160737 CTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACAC 160796 |||||||| || || || |||||||| || | ||||||||||||||||| | || || Sbjct 128745 CTCCAGGACGCATAGACGACGTTCTCCAGCTGGCTGGCCACAAAGACGTTCTTCAAGCAG 128804 Query 160797 GACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACG 160856 ||| | || ||| ||||| || || || || || ||| ||||||||| | | Sbjct 128805 GACGCAATGCCCGTTACCGCAGCTAAAAAGGGCTCCTCTGCTTTTTTGTCCACGTGAATG 128864 Query 160857 CAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTA 160916 ||||| | ||||||||| ||||||||||| || | |||||| | ||| || ||||| Sbjct 128865 CAATAAAAATTCTGAGGCATATAGATGGCCCTCAGGAGCCTCTCAAGCATTTCAATCTTG 128924 Query 160917 TGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCG 160976 ||||| | ||| || ||||| || || ||||| || |||||| |||||||| | | Sbjct 128925 TGATGAACCACTATGGAGTACGCGATTGGAAAGTCTACCTCCTCCTTACTCAGGGGCTCT 128984 Query 160977 GTCAGGTACTTTCGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | || || ||| || ||| ||||| |||| || || |||||||| ||||| Sbjct 128985 ACAATATATTTGCGCATCCAGATGAAATAGGCACAGTCGCGGGTCATGTTTATATA 129040 Score = 125 bits (138), Expect = 8e-24 Identities = 163/225 (72%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || |||||| || ||| || ||||| || Sbjct 127927 CAGATGCTCATCCAAACACTGGATGGCAAAGGGGTCAACATCAATGTCAAACTTATTGGC 127986 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 ||| | ||||| || | || |||||| || ||| || | ||||| ||||| || Sbjct 127987 GAAGAAGTGGTGT---TTGCGAAGCATCCAGCTCAAGTCACCAGCTCCGAAAACGCACAC 128043 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || || |||| || ||||| |||| ||||| | || || ||||| Sbjct 128044 GGAGCGCACGTGGACTCCACTGCACGGTGGGTAAGGAGCGCCTTTGGAAACATCCCCTTC 128103 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 ||||||||||||| |||||||| || | || | ||||||||| Sbjct 128104 AAAGTACTGCCACTTGACAAACCTAGCGACAGCATTCATGTCGGA 128148 >seq701 Length=656386 Score = 100 bits (110), Expect = 3e-16 Identities = 181/265 (68%), Gaps = 0/265 (0%) Strand=Plus/Minus Query 160120 GGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTA 160179 ||||| |||||| || |||||||||| ||| || ||||| | | ||||| | || Sbjct 66988 GGTGATGGTTCTGAAGTATCCAGTGCAGGTCCCCAGACCCATAAATACAGACAGCCCGCT 66929 Query 160180 TGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACT 160239 ||| || || ||||| | ||| | || || ||| | | ||| || || | || || Sbjct 66928 GGTGGACTCCTGAACAAGGTGTGTAAGGCGCCCCATTCTCAATGTCTCCCTCATGGTCCT 66869 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| | ||| || || || |||||| ||| ||| |||||| || || Sbjct 66868 GCCACTTGGTTAGCCTTGCAATAGCTCTCATGTCTGAGAGGTCAAATTTGTGGTGCAAGG 66809 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 || | | || || | | || |||||| ||||||||||| ||||| || || || | Sbjct 66808 GAGCTGATCCAGGCATCCAGGAGGCACGCTGGAGGGTGGCCCAAAGGTGCTCATCAGGAC 66749 Query 160360 TGTACGTGTCCTTAGACCATTCCAT 160384 |||| ||||| || | |||||| || Sbjct 66748 TGTAGGTGTCTTTTGCCCATTCGAT 66724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574569460831920