Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq12278 152 6e-31 seq15565 107 2e-17 seq11207 91.5 2e-12 seq209289 89.7 6e-12 seq7741 87.8 2e-11 >seq12278 Length=275372 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| ||| | ||| |||||||| ||||| | |||||| | || Sbjct 258246 GCTTGGCCAGTTCCCCGGGCAGCAGCAGACGCACGGCCGTCTGCACCTCGCGGGACGTGA 258305 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| ||| |||||| || ||||||| |||| | Sbjct 258306 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAAGCCTCGCTGGCGATGCGCTCGAAAA 258365 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 258366 TATCGTTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCAGTGTCGGGGT 258425 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 258426 GCACCTGCTTCAGCACCTTGTA 258447 >seq15565 Length=372695 Score = 107 bits (118), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 869715 CCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAA 869774 ||||||| || || ||||| || || || || || |||||||||||||| |||| Sbjct 363908 CCAGGTTTTCATTAACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAA 363849 Query 869775 AGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACGGTGTCGGCGCTGAGGTCCACCT 869834 | || | ||||||| | |||| ||||||| |||| | |||||||||| Sbjct 363848 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATGTCCTTGGAAAGGTCCACCT 363789 Query 869835 CCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGC 869894 |||| || ||||||| |||||||||| || |||||||||| ||| | | ||||| Sbjct 363788 CCTCAGCCGTCCAGAAGGAGGCCTCGGTTTTCTTGTACATCTGCCAGATATCATGGTATT 363729 Query 869895 GGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| || |||| || |||||| ||| || || | || || ||| || Sbjct 363728 CGATGGGAAAGATAACGAAGCGGCGGGGATTTTCTCTCAGCAAGGGCTC 363680 >seq11207 Length=200224 Score = 91.5 bits (100), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 |||||| || | || ||||| || || ||| ||||||| |||| ||||| || Sbjct 182953 GCGCTTATTGTAATGTGCCAGGCGCGAAGCTTCGCCTGCGATGCGTTCGAAGATGTCATT 183012 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||||||||||||||||| ||| | |||| || |||||| |||||||||||||| Sbjct 183013 GACAAACGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCCGTATCGGGGTGCACCTG 183072 Query 1254530 CTTGAGCACCTTGTA 1254544 ||| ||||| ||||| Sbjct 183073 CTTCAGCACTTTGTA 183087 >seq209289 Length=680 Score = 89.7 bits (98), Expect = 6e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||| |||| ||||||||||||| ||| | |||| |||| Sbjct 662 CGATGCGCTCGAAGATGTCACTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 603 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||| ||||||||| |||||||| ||||||||||| | | || |||||| Sbjct 602 TGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGTACACGTACACCGAGTA 551 >seq7741 Length=445359 Score = 87.8 bits (96), Expect = 2e-11 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 ||||| |||||||||||||| ||| | |||| ||||||||| ||| |||||||| Sbjct 286878 GTTGAAAAACGAGTTCATGATGCCCATAGCCTTGGAAGAGATGCCCGTGTCTGGGTGCAC 286819 Query 1254527 CTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 |||||| ||||||||||| | | ||| |||||| Sbjct 286818 CTGCTTCAGCACCTTGTACACGTACGCCGAGTA 286786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6077001601685714