Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq12278 185 1e-40 seq4742 118 2e-20 seq15565 102 1e-15 seq11207 96.9 5e-14 seq209289 86.0 1e-10 >seq12278 Length=275372 Score = 185 bits (204), Expect = 1e-40 Identities = 186/242 (77%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1485484 GCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACG 1485543 |||||||| ||||| || || |||||| |||||||||| ||| ||| | ||| |||||| Sbjct 258221 GCCTTGGTGCCCTCGGACACAGCGTGCTTGGCCAGTTCCCCGGGCAGCAGCAGACGCACG 258280 Query 1485544 GCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 || ||||| | |||||||| ||| || ||||||||| ||||||||||| Sbjct 258281 GCCGTCTGCACCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAATGCGCCAGGCGGGAA 258340 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||| || ||||||| |||| || |||||||| |||||||||||||| ||| | Sbjct 258341 GCCTCGCTGGCGATGCGCTCGAAAATATCGTTGACGAACGAGTTCATGATGCCCATGGCC 258400 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAACAAAGGACGAG 1485723 || |||||||| |||||||||||||||||| ||||||||||| ||| || ||| Sbjct 258401 TTAGACGAGATGCCAGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACACATAGATGGAG 258460 Query 1485724 TA 1485725 || Sbjct 258461 TA 258462 >seq4742 Length=317547 Score = 118 bits (130), Expect = 2e-20 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 43993 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGCA 44052 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||| ||| |||| ||| || |||||||| | Sbjct 44053 GCAGCAGGCGCACGGCCGTCTGGACCTCCCGGGACGTGATGGTCGAACGCTTGTTGTAGT 44112 Query 1485590 GCGCCAGGCG 1485599 |||||||||| Sbjct 44113 GCGCCAGGCG 44122 >seq15565 Length=372695 Score = 102 bits (112), Expect = 1e-15 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796187 CCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAA 796246 ||||||| ||| || ||||| || || || || || || || |||||||| |||| Sbjct 363908 CCAGGTTTTCATTAACTATGCCATCACTCGCCGCAAAGAAAGCCAGGACGTGAGATATAA 363849 Query 796247 AGTGACGCTCGTCGTCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCT 796306 | || | ||||||| | |||| ||||||| |||| | ||||| |||| Sbjct 363848 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATGTCCTTGGAAAGGTCCACCT 363789 Query 796307 CCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGC 796366 |||| || ||||| ||||||||||||| || |||||||||| ||| || ||||| Sbjct 363788 CCTCAGCCGTCCAGAAGGAGGCCTCGGTTTTCTTGTACATCTGCCAGATATCATGGTATT 363729 Query 796367 GGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||| || | ||| ||||| ||| || || | |||| ||||| Sbjct 363728 CGATGGGAAAGATAACGAAGCGGCGGGGATTTTCTCTCAGCAAGGGCTC 363680 >seq11207 Length=200224 Score = 96.9 bits (106), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| | |||| || || ||| Sbjct 119075 TGTACTTGGTGACGGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAACTCCCCAGGCA 119134 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | |||||||||||| ||||||||||| |||| Sbjct 119135 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGG 119167 Score = 96.9 bits (106), Expect = 5e-14 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| ||||| || |||||||| | ||||| ||||| ||| Sbjct 180785 TGTATTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGTTTAGCCAGCTCGCCCGGCA 180844 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG 1485562 | |||||||||||| ||||||||||| |||| Sbjct 180845 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGG 180877 Score = 91.5 bits (100), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| ||||| |||||||||||||||||||| ||| | ||| || | Sbjct 182991 CGATGCGTTCGAAGATGTCATTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAAA 183050 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||||| ||||||||||||||||| ||||| ||||| || Sbjct 183051 TGCCCGTATCGGGGTGCACCTGCTTCAGCACTTTGTACAC 183090 Score = 86.0 bits (94), Expect = 1e-10 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1485577 CGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTG 1485636 |||||||| |||||| |||| |||||| ||||||| |||| |||||||| Sbjct 119313 CGCTTGTTGTAATGCGCCAAGCGGGAAGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTC 119372 Query 1485637 ACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 || || ||||||||||| ||| | |||| || |||||| ||| || ||||| ||| Sbjct 119373 ACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAAATGCCCGTGTCCGGATGCACTTGC 119432 Query 1485697 TTGAGCACCTTGTAAAC 1485713 || || |||||||| || Sbjct 119433 TTCAGTACCTTGTACAC 119449 >seq209289 Length=680 Score = 86.0 bits (94), Expect = 1e-10 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 1485614 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTGGAGA 1485673 ||||||| |||| ||||| |||| |||||||||||||| ||| | ||| |||| Sbjct 662 CGATGCGCTCGAAGATGTCACTGACGAACGAGTTCATGATGCCCATGGCCTTGGAAGAGA 603 Query 1485674 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 |||| ||||||||| |||||||| ||||||||||| || Sbjct 602 TGCCGGTGTCGGGGTGGACCTGCTTCAGCACCTTGTACAC 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7877181193469238