Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq77463 87.8 1e-12 seq11124 82.4 5e-11 >seq77463 Length=3863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| ||| ||||| || || || || || || || | |||| Sbjct 248 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCT 307 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| || ||||| || ||||| |||| |||||||| | | | |||| || || Sbjct 308 TCCAACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCC 367 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||||| || || || | ||| ||| || || || | || |||| Sbjct 368 TGGATCTTGGCCTTGAC--ATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGG 425 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| |||||||| ||||| Sbjct 426 TCTTGCCAGTTAGGGTCTTCACAAAGATTTGCAT 459 >seq11124 Length=316893 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/217 (69%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | |||| |||||| || ||||| || || || || || | ||||| Sbjct 73973 AGGACCAGGTGCAGGGTGAACTCCTTTTGCATGTTGTAATCAGAAAGAGTGTGGTCATCT 73914 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT-----TGCGGC--ACCCCCTC 34878 ||||| ||||| || || || || |||| ||||| ||| || ||| | ||||| Sbjct 73913 TCCAGCTGCTTGCCTGCAAAAATGAGTCCCTGCTGCTCTGTGTATGGGGCATATGCCCTC 73854 Query 34879 CTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGT 34938 | || | | || | ||| ||| || || | ||| ||| || | || | ||| Sbjct 73853 TTAATCCTGGACCTTGTCTTTCACG--TG--ATGGTGTCACTGGGTTCTGCCTCTAGGGT 73798 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGC 34975 |||||||| || || | |||||| |||||||| ||| Sbjct 73797 GATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGC 73761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324235076582798