Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq14171 95.1 9e-14 seq10737 93.3 3e-13 seq1632 89.7 4e-12 seq2669 86.0 5e-11 >seq14171 Length=596195 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| || ||||| ||||| ||||| |||||||| | || || | ||||| Sbjct 513750 TGTTGTAGCTACTATAGCTTTTGGAATGGGCATTAATAAGGCCGACATTCGCAGAGTTAT 513809 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || ||||| ||| | || ||| ||||| || |||||||||||||| || || Sbjct 513810 TCATTATGGCGCTCCTAAGGAAATGGAATCCTATTACCAGGAAATTGGTAGAGCTGGCCG 513869 Query 131296 TGATGGA 131302 |||||| Sbjct 513870 GGATGGA 513876 >seq10737 Length=286749 Score = 93.3 bits (102), Expect = 3e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || ||||| || ||||| |||| |||||||||||| || || || ||||||| | ||| Sbjct 38428 TTCTTATCTAGCCCATAGGCAATAGCAGCAGCAGTCGGCTCGTTGATAATTCGAAGCACA 38369 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAA 282447 |||||||||||||| |||| ||||| || || || || | || ||||| || || Sbjct 38368 TTAAGACCAGCAATAGTTCCGGCATCCTTTGTTGCCTGCCGCTGAGAATCATTGAA 38313 >seq1632 Length=481465 Score = 89.7 bits (98), Expect = 4e-12 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGA---TTTATCAGCGGCAGTCACATT 281436 ||| ||||| || || || || ||||||| || ||| || | || ||||| Sbjct 161455 ATTGGTAATTGTGATTTTGTT---TTTGTTTCCTGTACCTTTGTCTTCAGCTGTCACTCG 161399 Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 |||||||||||| |||| | ||||| || |||||||| ||||| ||||| | |||| Sbjct 161398 AAGAATACCATTAACATCTATCTCAAAGGTAACTTCAATCTGAGGTACCCCACGGGGAGC 161339 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 || ||||| || || || |||||| |||||| || ||| ||||| || | ||| Sbjct 161338 TGGAGGGATTCCAGTCAGATCAAATGTACCCAGAAGATGATTGTCTTTTGTTAGGGGTCG 161279 Query 281557 TTCACC 281562 |||||| Sbjct 161278 TTCACC 161273 >seq2669 Length=842545 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 400295 AATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTA 400354 ||||||| || || |||| |||||||| ||||| ||||| | || | || || ||| Sbjct 546584 AATGTACACTTATCCTGACTGAGGGAGACTCAGCCAAAACTCTGGCAGTTTCGGGTCTTG 546525 Query 400355 ATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTA 400414 ||| |||||||||| | |||||||| || || |||||||||||| | | ||||| Sbjct 546524 GTGTAGTTGGAAGAGACAAATATGGAGTATTTCCTCTTAGAGGAAAAATACTCAATGTAC 546465 Query 400415 GGGATGCTAGTCCTAAA 400431 | || ||| || |||| Sbjct 546464 GAGAAGCTTCTCATAAA 546448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3722600369764692