Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8072 98.7 2e-15 seq850 95.1 2e-14 seq10009 91.5 3e-13 seq2536 87.8 4e-12 >seq8072 Length=1211495 Score = 98.7 bits (108), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || | || || || ||||| | | | | || ||||| || || Sbjct 11695 TGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 11636 Query 82668 TTTCCAGCA-AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||| ||||| || || || || || ||||| |||||||||||||| || ||||| Sbjct 11635 TTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTCCTTATCCTGGATCTT 11576 Query 82727 TGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || || |||||||| || || || ||||| || || | || || || || || || Sbjct 11575 GGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGT 11516 Query 82787 CAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| Sbjct 11515 AAGGGTCTTCACGAAAATCTGCAT 11492 >seq850 Length=2098092 Score = 95.1 bits (104), Expect = 2e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 82586 TCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAG 82645 ||||| || | | || |||| |||||| || ||||||||||| || || | |||||| || Sbjct 356292 TCCTC-CAGATGAAGGACTAGGTGCAGGGTGGATTCTTTCTGAATGTTGTGATCAGAAAG 356350 Query 82646 AATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTAT 82705 | | || |||| | || || ||||||||| | | ||||| || || ||||| Sbjct 356351 AGTGTAGCCACCTTCCGACTCCTTGCCTGCAAAGATTTGCTTCTGTTGGTC-GGGGGTAT 356409 Query 82706 TCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTC 82765 || || ||||| || ||||| | || ||||| ||||| | || | | || || || || Sbjct 356410 GCCCTCTTTATCCTGGATCTTGACCTTCACATTCTCAATGGCATTACTGGGCTCCACCTC 356469 Query 82766 CAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || |||||| ||| |||| ||||| || |||||| Sbjct 356470 TAGGGTAATGGTCTTGTGGGTCTGGCTCTTCACAAAGATTTGCATT 356515 >seq10009 Length=301806 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||| || || || ||||| | | | | ||||| || || || || | ||||| Sbjct 118452 CTTTCTGGATCTTTTAGTCAGACATGGTGCAGACATCTTCCAGCTGCTTGCCTGAAAAGA 118393 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 || || || || || | ||| | || | || || ||||||||||| || || || | Sbjct 118392 TTGACCTGTGCTGGTCAGAGGGTGTGCCGTT-TTGTCCTGAATCTTTGCCTTGACGTTCT 118334 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || | ||||| || |||| ||| || ||||||| ||||| |||| || || Sbjct 118333 CAATAGTGTCTCTGGGTTCAACCTCCAGAGTGATGGTCTTGCTTGTCAGGGTCTGTATAA 118274 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 118273 AGATCTGCAT 118264 >seq2536 Length=684130 Score = 87.8 bits (96), Expect = 4e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 |||||| | || ||||||||||||| | |||| ||||| | || || || ||||| || Sbjct 666629 GATAGCTGGTGCCTTATGGTGGTACTTTGTATCAAAAGGAGTGGAGTATTTGGATACTGT 666688 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||||||||| || ||||| || || ||||| ||| | ||||| || ||||| | Sbjct 666689 GTTTTTCATCCTGAGGAAGAAAAACAACCAGGTCTCTTTCCTTCACGTGTACCATCACTG 666748 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || ||||| || | | ||| | || || || ||| | || || || |||| Sbjct 666749 CACCATGTTCACACTGTGGTGGATCGGAATCAAGTGGGTGGCAGGTGGCCAAG 666801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977207420135038