Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq4742 105 9e-18 seq170478 104 3e-17 seq16591 104 3e-17 seq27431 95.1 2e-14 seq47439 86.0 8e-12 seq1511 86.0 8e-12 >seq4742 Length=317547 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 150904 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 150845 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 150844 CCCCGACGGGGAG 150832 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 150903 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 150844 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 150843 CCCGACGGGGAG 150832 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 150832 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 150891 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 150892 TACTAACGAGGA 150903 >seq170478 Length=3692 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1484 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1543 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1544 CCCGACGGGGAG 1555 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 1483 GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 1542 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 1543 CCCCGACGGGGAG 1555 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1555 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1496 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1495 TACTAACGAGGA 1484 >seq16591 Length=727689 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 44376 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 44435 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 44436 CCCGACGGGGAG 44447 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 44376 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 44435 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 44436 CCCGACGGGGAG 44447 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 44447 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 44388 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 44387 TACTAACGAGGA 44376 >seq27431 Length=5810 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || |||||| ||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2357 TCTTCGTTATTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2416 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 2417 CCCGACGGGGAG 2428 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||| |||||| ||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 2356 GTCTTCGTTATTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2415 Query 11788 CCCCGACGAGGAG 11800 |||||||| |||| Sbjct 2416 CCCCGACGGGGAG 2428 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2428 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2369 Query 139413 TACTAACGAGGA 139424 || |||||| || Sbjct 2368 TAATAACGAAGA 2357 >seq47439 Length=5358 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 8660 CTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 8719 || |||||||||||||| | | | |||| ||||| | ||||||||||||||||||||||| Sbjct 1816 CTGGTTAGTATAGTGGTGACTGTCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCC 1757 Query 8720 CGACGAGGAG 8729 ||||| |||| Sbjct 1756 CGACGGGGAG 1747 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||| | | ||||||| Sbjct 1747 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGACAGTCACCACTA 1806 Query 139413 TACTAACGAG 139422 ||||||| || Sbjct 1807 TACTAACCAG 1816 Score = 82.4 bits (90), Expect = 1e-10 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Minus Query 11732 CTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCCC 11790 || |||||||||||||| | | | |||| ||||| | ||||||||||||||||||||||| Sbjct 1816 CTGGTTAGTATAGTGGTGACTGTCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCC 1757 Query 11791 CGACGAGGAG 11800 ||||| |||| Sbjct 1756 CGACGGGGAG 1747 >seq1511 Length=879679 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||| |||||||||||||| ||||| |||| ||| | | |||||||||||||||||| | Sbjct 628388 TCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGCCACGTGGGAGACCGGGGTTCGATCC 628329 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 628328 CCCGACGGGGAG 628317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||| |||||||||||||| ||||| |||| ||| | | |||||||||||||||||| Sbjct 628389 GTCCTTGTTAGTATAGTGGTGAGTATCCCCGCCTGCCACGTGGGAGACCGGGGTTCGATC 628330 Query 11788 CCCCGACGAGGAGGGAGGTTA 11808 |||||||| |||| | |||| Sbjct 628329 CCCCGACGGGGAGATATGTTA 628309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 649847899624480