Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq9155 104 2e-17 seq8072 104 2e-17 seq77463 91.5 1e-13 >seq9155 Length=358325 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||| ||||||||| || |||| || || || | | | ||||| ||||||||||| Sbjct 307783 GTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCA-TCCTCCAGCTGCTTGCC 307725 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | |||||||| || ||||||||||||||||| |||||| ||| Sbjct 307724 GGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCCTT 307665 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||| || || | || | ||| ||||| ||||| || Sbjct 307664 GACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTCTTGCCCGTCAGGGT 307605 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || || |||||| Sbjct 307604 CTTCACAAAGATATGCATG 307586 >seq8072 Length=1211495 Score = 104 bits (114), Expect = 2e-17 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| || | || ||||| || || || | | | || || |||| Sbjct 11696 ATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGGCCA-TCTTCCAGCT 11638 Query 133516 GCTTGCCCGCGTAA-ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||||| ||| || || |||| |||||| || ||||| || |||||||| || |||| Sbjct 11637 GCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTCCTTATCCTGGATC 11578 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | ||||| ||| || || |||| ||||| |||||| || Sbjct 11577 TTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGTGATGGTTTTCCCC 11518 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || |||||||||||||| Sbjct 11517 GTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq77463 Length=3863 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| ||||||||||| | ||| | | | || || | ||| || | Sbjct 262 GGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCA-TCTTCCAACTGTTTTC 320 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| | ||||||||| || | |||| | || || || |||||| || Sbjct 321 CTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGGATCTTGGCCT 380 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||| ||||| || | |||| ||| ||||| || || | Sbjct 381 TGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTTGCCAGTTAGGG 440 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || || ||||| Sbjct 441 TCTTCACAAAGATTTGCAT 459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481201644732080