Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6848 165 9e-36 seq6114 91.5 2e-13 >seq6848 Length=162012 Score = 165 bits (182), Expect = 9e-36 Identities = 294/429 (69%), Gaps = 0/429 (0%) Strand=Plus/Plus Query 162555 GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTT 162614 ||||| |||| ||||||| || ||| ||| || | | ||||| || || ||||| Sbjct 128540 GTGTCGCTTCTTCCACCTTTCCTCCTTGTTGGGAGGCATCTTCTCGGTTTCCAGGCTGTT 128599 Query 162615 ACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTC 162674 ||| || | ||| |||| | || || || || ||||| |||| || ||||| Sbjct 128600 TTCGCCCAGGAATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGGAAGTC 128659 Query 162675 GGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAG 162734 | |||||||| || || | || ||||| || | || | | ||||| |||| | Sbjct 128660 CATACCGCAGAGGTTGATCAAGTACTTCCAGTTTGCACTCATGCTGTACAAGTCCTTCAT 128719 Query 162735 ACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGT 162794 ||||| || || ||||| || |||||||| ||||| || |||||| |||||| | | Sbjct 128720 GCAGTTGAGGTCAGCCTGAACCCGACTCCAGGACGCATAGACGACGTTCTCCAGCTGGCT 128779 Query 162795 GGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACATCGG 162854 ||| |||||||| || | || || || | || ||| | || || | | || | Sbjct 128780 GGCCACAAAGACGTTCTTCAAGCAGGACGCAATGCCCGTTACCGCAGCTAAAAAGGGCTC 128839 Query 162855 GTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAG 162914 || ||||| | || ||||| | ||| || | ||||||||| |||||||||||||| Sbjct 128840 CTCTGCTTTTTTGTCCACGTGAATGCAATAAAAATTCTGAGGCATATAGATGGCCCTCAG 128899 Query 162915 TAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTC 162974 | ||||| | ||| || ||||| || || ||||| || || ||||| || || || || Sbjct 128900 GAGCCTCTCAAGCATTTCAATCTTGTGATGAACCACTATGGAGTACGCGATTGGAAAGTC 128959 Query 162975 AGCCTCCTC 162983 ||||||| Sbjct 128960 TACCTCCTC 128968 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 || || | |||||| ||||||||||| |||||||| || || |||||||| || || | Sbjct 128021 TCACCAGCTCCGAAAACGCACACGGAGCGCACGTGGACTCCACTGCACGGTGGGTAAGGA 128080 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 || || | | |||||||| || |||| |||||||| || ||||||| || ||| | | Sbjct 128081 GCGCCTTTGGAAACATCCCCTTCAAAGTACTGCCACTTGACAAACCTAGCGACAGCATTC 128140 Query 162292 ATGTCGGAGGTGTCGTACTT 162311 |||||||| ||| ||||| Sbjct 128141 ATGTCGGACAAGTCATACTT 128160 >seq6114 Length=105040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/204 (71%), Gaps = 7/204 (3%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||||| ||| || ||| || | ||| ||||| |||| | || || ||| | || || Sbjct 71096 ACAGTGCCCTGGTATAAAACCTGGCAGATCACTTCCT---TCCCAACCTGATTCTTGGGG 71152 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATG-TAGA-ACGGTTT 171641 ||||| || | |||||||| || |||||||| ||||| || ||| ||| || | | Sbjct 71153 TCTTTGACCCGGAGAATGCTGGTGACAGATGTGGTCCCATTTGAATGGTAGTGAC--TCT 71210 Query 171642 TAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAG 171701 |||||||| || ||||| | || | | ||||| || ||||| ||||| | | Sbjct 71211 CGGTACTATTCTCAATTCCTGTCCCAGTGCCCTTCCAGGCAATGACAGGGGCTGGGCGGG 71270 Query 171702 CAGTAGCAGAGCAAGTTATGTTTA 171725 |||| ||||||||||| ||||||| Sbjct 71271 CAGTCGCAGAGCAAGTGATGTTTA 71294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575776693443200