Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq8072 100 7e-16 seq11875 96.9 8e-15 >seq8072 Length=1211495 Score = 100 bits (110), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| | || || ||| | ||||| | ||| Sbjct 11507 AAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTGGACACTATAGAAAAT 11566 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT- 206303 || ||| ||||| || || || ||||||||| || || || || || ||||| Sbjct 11567 GTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAGCAGAGGCTGATCTTG 11626 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | |||||| | || |||||| ||| || ||||| Sbjct 11627 CGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATCCCAAAGGAGTC 11686 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| || || ||||||||||| Sbjct 11687 CACCCTTCATCTGGTGTTGAGACTTCG 11713 Score = 87.8 bits (96), Expect = 4e-12 Identities = 79/98 (81%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||| || ||||| || ||| || ||||||| |||||| Sbjct 11713 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTA 11654 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCG-AAGATAAGCC 204848 | ||||||||||||||||| || ||| ||||| |||| Sbjct 11653 CGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCC 11616 >seq11875 Length=615414 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/105 (81%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || | ||| || |||||||| |||| || ||||||| |||||| Sbjct 50179 CGAAGTCTCAACACCAGATAAAG-GTGGACTCTTTTTGGATGTTGTAGTCAGACAAAGTA 50121 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| |||| || |||||||| |||| |||||| Sbjct 50120 CGGCCATCTTCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGTTGA 50076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176259992623882