Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq311925 197 2e-45 seq6114 149 7e-31 seq303837 145 9e-30 seq7033 127 2e-24 seq37053 87.8 2e-12 seq53675 82.4 9e-11 >seq311925 Length=381 Score = 197 bits (218), Expect = 2e-45 Identities = 235/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||| ||||| | ||| ||||||| |||| || || ||| | | ||| || ||| Sbjct 25 GTGGTGACGCAGGACGTGAGAAAGCTGCTGCACACACCTGCATCCTTAAGATGTTCTCTG 84 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || || ||||| ||||||| || |||||||||| || | | ||||| Sbjct 85 AAGCTATCCCAGGAACCCTTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAA 144 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | |||| ||||||| ||| || || || |||||||| || |||| |||| | Sbjct 145 AACATGGTCACTTACAGCAAAGCCCATGGAGTTGTAGTCCAGCCTGCATATAGAGACAGG 204 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||| |||| |||||| || ||| |||||| || ||||| || ||| | Sbjct 205 GTAAACATCACTGAGCTGGGACTCTGGAATACAAGCATCACCTTCTGGAACACAACCCTG 264 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || ||||| ||||||| || ||||| || || |||| |||||||| ||||| ||| Sbjct 265 GAAGATGAGGGCTGCTACATGTGTCTCTTCAATACTTTTGTTTCTGGGAAGATCTCAGGG 324 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||||||||| Sbjct 325 ACAGCCTGCCTCACCCTCT 343 >seq6114 Length=105040 Score = 149 bits (164), Expect = 7e-31 Identities = 180/245 (73%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || || || | |||||| |||||||| |||||||| || Sbjct 71340 GTACAGCCCATAGTATTCCTTCACTACAACTATTTTGAAGACCACCTAAACATCACTTGC 71281 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||| | ||||||||| | ||| ||| |||||| | ||| ||| |||||| Sbjct 71280 TCTGCGACTGCCCGCCCAGCCCCTGTCATTGCCTGGAAGGGCACTGGGACAGGAATTGAG 71221 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| |||| || | |||||| ||||| || || ||||| ||||| | |||| Sbjct 71220 AATAGTACCGAGAGTCACTACCATTCAAATGGGACCACATCTGTCACCAGCATTCTCCGG 71161 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| | || ||||| || |||||||| || | ||| ||| Sbjct 71160 GTCAAAGACCCCAAGAATCAGGTTGGGAAGGAAGTGATCTGCCAGGTTTTATACCAGGGC 71101 Query 171633 AATGT 171637 | ||| Sbjct 71100 ACTGT 71096 >seq303837 Length=344 Score = 145 bits (160), Expect = 9e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 80 CTTTAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAA 139 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||| || || ||||||||||| |||||||| || |||||||| | Sbjct 140 GGGCACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATT 199 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 || || || || || || ||| ||||| || ||||| ||||| Sbjct 200 CGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 244 >seq7033 Length=464768 Score = 127 bits (140), Expect = 2e-24 Identities = 127/167 (76%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 ||||||||||||||||||| |||||||||| ||||| ||||||||| ||| ||||||| Sbjct 230457 AGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGA 230516 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || ||||| || || ||||||||| | |||| Sbjct 230517 TGCCCCAGGCAGAGAACCA------------TGGCCCAGAAATCAAGGAGCATTTGAACT 230564 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||| || ||||| |||||||| || | ||||| ||| ||| Sbjct 230565 CCCTGGGAGAGAAGCTGAAGACCCTCAGGAGGCAGCTGCAGCGCTGT 230611 >seq37053 Length=465738 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| | || |||||| | ||||||| || || ||||| Sbjct 380068 GTATTCCCTGGTGTTCATCATTGGCGTGATAGGCAATATCTTGGTGATTCTGGTTCTCAT 380009 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||| ||| || | | |||||||| ||||| ||| |||||||||||| | ||| Sbjct 380008 GCAGTACAGGAGACTTCGAAGCATGACCAGCATCTACCTATTCAACCTGGCCATCTCTGA 379949 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||| | | ||| ||| | || || |||||| ||| Sbjct 379948 TCTGGTCTTCCTTTCCACTTTGCCTTTCTGGATTTACT 379911 >seq53675 Length=35847 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| || | |||| || | ||||| |||| | || ||||||| Sbjct 9057 GTACTCCCTGGTATTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGCTGATCCTCAT 8998 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| || |||| || ||| | || |||| |||| ||||| |||| || ||| Sbjct 8997 AAAGTACAGGAAGCTCCAAATTATGGCTAATATCTACCTGCTCAACTTGGCAATTTCTGA 8938 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||| | || || |||||||||| Sbjct 8937 CCTGCTCTTTCTCTTCACCGTTCCATTCTGGATTCACT 8900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580809483748800