Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12278 167 3e-35 seq4742 98.7 1e-14 seq15565 95.1 2e-13 >seq12278 Length=275372 Score = 167 bits (184), Expect = 3e-35 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || ||| |||| || ||| ||||| Sbjct 258447 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC---TGG--CATC-TCGTCTAAGGCCATG 258394 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| |||||||| || |||| ||||||| || |||||| ||| Sbjct 258393 GGCATCATGAACTCGTTCGTCAACGATATTTTCGAGCGCATCGCCAGCGAGGCTTCCCGC 258334 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | |||||| | ||||| |||||||| Sbjct 258333 CTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGCGAGGTGCAGACGGCCGTGCGT 258274 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| |||||||||| |||||| || ||||||||||||| Sbjct 258273 CTGCTGCTGCCCGGGGAACTGGCCAAGCACGCTGTGTCCGAGGGCACCA 258225 >seq4742 Length=317547 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||||| || ||||||||| || ||| | || ||| ||||||| |||||| Sbjct 44122 CGCCTGGCGCACTACAACAAGCGTTCGACCATCACGTCCCGGGAGGTCCAGACGGCCGTG 44063 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 44062 CGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 44011 >seq15565 Length=372695 Score = 95.1 bits (104), Expect = 2e-13 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| ||||| | || || || |||||| || | || |||||| ||||| Sbjct 363680 GAGCCCTTGCTGAGAGAAAATCCCCGCCGCTTCGTTATCTTTCCCATCGAATACCATGAT 363739 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||||| | ||| ||||||||||||| ||||| || |||||||| ||||| Sbjct 363740 ATCTGGCAGATGTACAAGAAAA-CCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCT 363798 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 | |||| ||||||| |||||| ||||||| | ||||| || || Sbjct 363799 TTCCAAGGACATTCAACACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCTCA 363858 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGG 1455946 |||||| | |||| || || || || |||||||| || || ||||||| Sbjct 363859 CGTCCT-GGCTTTCTTTGCGGCGAGTGATGGCATAGTTAATGAAAACCTGG 363908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7142390034109204