Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq8072 113 4e-20 seq9155 84.2 2e-11 >seq8072 Length=1211495 Score = 113 bits (124), Expect = 4e-20 Identities = 165/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | |||||||||| ||| | || ||||||| | |||||||| || | | Sbjct 11719 CCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGAC 11660 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGC-AAATATCAACCGCTGCTGGTCCGAAGG 35628 || || || | || ||||||||||| || || || |||| || |||||| || | ||| Sbjct 11659 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGG 11600 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||||| ||| |||||| ||| | | || | | ||||| | ||| || Sbjct 11599 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAAC 11540 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||| | ||||| ||||| ||||| | || ||||| || |||||||| ||| Sbjct 11539 CTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCATCCTG 11488 >seq9155 Length=358325 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| || || || ||| || || ||||||| || | || ||| | | || || Sbjct 307796 CACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCCTC 307737 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 ||||||||| || |||||||||| | |||||||| | || | || |||||||| Sbjct 307736 CAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTG 307677 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||| | | | | | ||||| || | | ||||| | || || || || Sbjct 307676 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTCTT 307617 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 ||||||| || |||||||| || ||||| ||| Sbjct 307616 GCCCGTCAGGGTCTTCACAAAGATATGCATGCTG 307583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448724220709360