Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq8072 93.3 4e-14 >seq8072 Length=1211495 Score = 93.3 bits (102), Expect = 4e-14 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||| | ||||||||||| | ||| || | Sbjct 11710 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAA-AGTACG 11652 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGC-AAAAATCAAACGCTGCTGATCGGGCGGTATGCCTT 134613 || || ||||| ||||| || || |||| | |||||| || || || || |||| Sbjct 11651 GCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTT 11592 Query 134614 CTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAG 134673 | || || || || || ||||| || | ||||| | | ||| || ||||| | Sbjct 11591 CCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGG 11532 Query 134674 TAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | |||||||| || || | || || |||||||| ||||| Sbjct 11531 TGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503078356009840