Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq116 98.7 1e-15 >seq116 Length=588768 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 214082 CGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATT 214141 || || ||| |||| | ||| | ||||| || ||||| ||| | ||| |||| || | Sbjct 399549 CGGTTTGCAGTGGGGCAGGAGGTCTTTGGTCTGGTGCCTGGTCTGATGATGTATGCTACC 399608 Query 214142 ATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGG 214201 ||||||||| | ||||||||||| || || || || || |||| ||||| || || ||| Sbjct 399609 ATCTGGCTGCGGGAGCACAACAGAGTGTGTGATGTTCTTAAACGGGAGCATCCTGAGTGG 399668 Query 214202 AACGACGAACAGCTGTTCCAGA 214223 |||| |||| ||| ||||||| Sbjct 399669 GACGATGAACGGCTCTTCCAGA 399690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720020285974080