Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq15565 163 4e-35 seq5311 147 3e-30 seq5156 120 4e-22 seq174228 107 3e-18 >seq15565 Length=372695 Score = 163 bits (180), Expect = 4e-35 Identities = 172/226 (76%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||||| |||||||| || |||||||| || || || || | Sbjct 366573 CCTCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCT 366514 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| ||||| |||||||| ||||| || || ||||| | Sbjct 366513 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 366454 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTGTGCCCAATCAG 39815 | |||| | ||||| || | | || || | ||||| | | ||||| || | Sbjct 366453 CCACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGG 366394 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||||| || |||||||||||||| || |||||||| |||||||| Sbjct 366393 CCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 366348 >seq5311 Length=191600 Score = 147 bits (162), Expect = 3e-30 Identities = 219/306 (72%), Gaps = 6/306 (2%) Strand=Plus/Plus Query 39619 GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCC 39678 |||||||||||| |||| ||||||||||| ||||| || ||||| |||||||| || || Sbjct 42068 GGCGAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAACTCGTTGGAAAATGTAAGGCC 42127 Query 39679 AGGCATTAGACCACGCTTT-TTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGA 39737 |||||| || || || ||| |||||||| ||||| | |||||| ||| | ||||||| Sbjct 42128 AGGCATCAGTCCCCGTTTTCTTGAGCCAGAATATTGACACAAAAGGACCAAAGAAGAAGA 42187 Query 39738 TGCCTTCTACTGCTGCAAATGCAAC-AAGTCTCTCTCCGTAACTTGTATCATTAT---GT 39793 | |||| | || ||||||| || || || ||||| || | || || | Sbjct 42188 TCGCTTCCGCAGCATCAAATGCCACAAACTCGTTCTCCATAGGAAGCCTCTTTGTCCCCA 42247 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||| || | || | ||||| ||||| ||| |||||||||| | || |||||||| Sbjct 42248 ATCCATCTCAGGACCTAGTCAGCCTTCTT-TTTCAACAAGGCATTATCTCAATAGCATTG 42306 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||| || | || | |||||||| || | || || | ||||| |||||| Sbjct 42307 AAGAGTTATACCCTCTCTTTGAAATCTTTAATGTAACTGTCAATGAGGAGACTGTACATT 42366 Query 39914 TCTGAA 39919 || ||| Sbjct 42367 TCAGAA 42372 >seq5156 Length=389234 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||||||||| || ||| ||| | || || || || || || | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || ||||||||||||||||| ||||| || || ||||| || | || | ||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | |||| |||||||| | ||||||| | | ||| || | ||||| |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || || || || ||||| || |||||||| || || || | || Sbjct 236487 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 236546 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| |||||||| ||||||||||| ||||| ||||| || || | | |||||| Sbjct 236547 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 236606 Query 68839 TTTCTAAGACCAT 68851 || || | ||||| Sbjct 236607 TTCCTTATACCAT 236619 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | |||||||| |||||||| ||||| || ||||||||||| ||| Sbjct 250542 GTCCCAGCATTGAACAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 250601 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 ||||||||||| || | || ||||| | ||||| || | | || | ||||||| Sbjct 250602 TATGTTTCAATTGCAGCGTCGATATCGTCTTTGTGAATCCCCACAGATACCCTCATCAAC 250661 Query 70111 ATATGCTGAGGTCGTTC 70127 |||||||| |||| ||| Sbjct 250662 ATATGCTGTGGTCTTTC 250678 Score = 100 bits (110), Expect = 4e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| ||||| || || || | || || || ||||||| | Sbjct 255804 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 255863 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | |||||| | || || ||| | || ||||| | ||||| | Sbjct 255864 TGGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCA 255923 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || ||||| | || || ||||| || |||||||||| Sbjct 255924 GTTCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCATGG 255971 Score = 86.0 bits (94), Expect = 9e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||||| Sbjct 243368 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 243427 Query 69577 CA 69578 || Sbjct 243428 CA 243429 >seq174228 Length=3070 Score = 107 bits (118), Expect = 3e-18 Identities = 179/260 (69%), Gaps = 18/260 (7%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| |||||||| |||| ||| |||||| ||||| | |||||||||||||| || Sbjct 1926 CAGGCAAAGTCACAGTGTAAACCCAGATCTCTGCTAATAAGCTCGTTAGAAAATGTAAGG 1867 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 ||||||| || || | || |||||||| |||| | |||||||| |||| ||||| Sbjct 1866 TCAGGCATCAGTCCCGGTTTCTTGAGCCATTATATTGACGCAAAAGAGCCAG---AGAAG 1810 Query 39737 ATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GT 39793 | | ||| | || ||||| || |||| || ||||| || | | || | | Sbjct 1809 GTCGCATCTGCAGCAGCAAAGGCCACAAATCATTCTCCATAGGTAGCCTCTTGGTCCCCA 1750 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTC------------TTCTTTACACAAGGCATTGTT 39841 ||||| | | ||||| || |||| || || |||||||||||||| Sbjct 1749 ATCCAACGCAGGGCCCAGGGAGTTTTCTGGGGTTTTTTTTTTTTCACACAAGGCATTGTC 1690 Query 39842 TCTATAGCATTAAAGAGATA 39861 || |||||||| ||||| || Sbjct 1689 TCAATAGCATTGAAGAGTTA 1670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 683755527980880