Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq15565 105 5e-18 seq5311 100 2e-16 seq303837 98.7 8e-16 seq174228 87.8 1e-12 seq53448 86.0 5e-12 seq11661 84.2 2e-11 >seq15565 Length=372695 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||| | ||||||||| | || || | ||||| || |||| ||||| || ||| Sbjct 363686 TTGCTGAGAGAAAATCCCCGCCGCTTCGTTATCTTTCCCATCGAATACCATGATATCTGG 363745 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 || |||||||| ||| | |||| || || ||||| || || || || || | | || Sbjct 363746 CAGATGTACAAGAAAACCGAGGCCTCCTTCTGGACGGCTGAGGAGGTGGACCTTTCCAAG 363805 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 ||| | ||| ||| || | ||||| | || | ||||||||||||| || || Sbjct 363806 GACATTCAACACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCTCACGTCCTG 363865 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGT 43903 || || ||||| ||||| || || ||||| |||||||| |||| ||| Sbjct 363866 GCTTTCTTTGCGGCGAGTGATGGCATAGTTAATGAAAACCTGGTGAGT 363913 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | |||| || || ||||| ||||| || ||||||||||| ||||| Sbjct 365090 CAAGAAGTTCAGGTCACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAAC 365149 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| || || || || ||||| |||||| Sbjct 365150 ATACATTCTGAAATGTACAGTCTCCTCATTGACACTTACATTAAAGAT 365197 >seq5311 Length=191600 Score = 100 bits (110), Expect = 2e-16 Identities = 208/305 (68%), Gaps = 6/305 (2%) Strand=Plus/Minus Query 43978 TTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCG 44037 ||| |||||||||||||| || || || | ||||| |||||| | |||| | Sbjct 42372 TTCTGAAATGTACAGTCTCCTCATTGACAGTTACATTAAAGATTTCAAAGAGAGGGTATA 42313 Query 44038 ATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 | | || ||||| || || | | | ||| | | ||| | || || |||| || ||| | Sbjct 42312 ACTCTTCAATGCTATTGAGATAATGCCT-TGTTGAAAAAGAAGGCTGACTAGGTCCTGAG 42254 Query 44098 ATGGAT---AAATTCAAATGATTCTTTTGGAGAACGA-CTTGTCGCGTTTGCAGTTGTGG 44153 |||||| | | | | ||| | |||||||||| |||| || |||| | || || Sbjct 42253 ATGGATTGGGGACAAAGAGGCTTCCTATGGAGAACGAGTTTGTGGCATTTGATGCTGCGG 42194 Query 44154 AAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAG-AAACGAGGTTTG 44212 ||| || ||||| | || | |||| | | ||||| ||| | ||| ||||| || || Sbjct 42193 AAGCGATCTTCTTCTTTGGTCCTTTTGTGTCAATATTCTGGCTCAAGAAAACGGGGACTG 42134 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 |||||||| | || ||||| || ||||| || || | ||||| || ||||| || || Sbjct 42133 ATGCCTGGCCTTACATTTTCCAACGAGTTTATTAGCAGAGATGAGGGTTTACACTGTGAC 42074 Query 44273 TTTGC 44277 || || Sbjct 42073 TTCGC 42069 >seq303837 Length=344 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| |||| ||||| ||| | ||||| || || || ||||| || |||| Sbjct 246 TGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAATGGGGAGCTGT 187 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || || | || || || ||||| || ||||| || || || || || ||||| || | Sbjct 186 CTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTCAACATTGCCA 127 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| |||||||| || |||||||||||| Sbjct 126 GCTATGCCCTGCTCACCTACATGATTGCACAC 95 >seq174228 Length=3070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/220 (69%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || ||||| |||| || || ||||| || || ||||| || | | || || | | Sbjct 1213 AAGAAAGCCGAGGCCTCCTTCTGGACGGCTGAGGAAGTAGACCTTTCCAAGGATATCCAA 1272 Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 |||| || || | |||| | || | |||| |||| ||| || |||| || ||| Sbjct 1273 CATTAGAA-GCGCTGAAACTGAACGAGAGACATGTTATTTCTCACGTCCTGGCTTTCTTT 1331 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924 ||| |||| || || |||||||||||||| |||| | ||| |||||||| | | Sbjct 1332 GCTACGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCTCTTTAGCCAAGAAGTACTA 1391 Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 | |||| || || ||||| ||||| || |||||||||| Sbjct 1392 GTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCA 1431 >seq53448 Length=237101 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 ||||||| ||||||||||||||||| ||||| |||||||| ||||| || || ||||| | Sbjct 216822 AAAACCCCTTTGATTTTATGGAAAACATTTCTTTGGAAGGGAAAACGAATTTCTTTGAGA 216881 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 |||| ||| || || ||||| | | |||||| Sbjct 216882 AACGAGTTTCTGAGTACCAGCGGTTCGCAGTCATG 216916 >seq11661 Length=73673 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 6/156 (4%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTT------CT 19602 |||||||| || || | |||||| | || || ||||| ||||| ||||| || Sbjct 16752 TTGCACATCATCATCTTTGATGAAATCGATGCCATCTGCAAGCAGAGAGGGAGCATGGCT 16693 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | ||||| ||||||||||| ||||| || || ||||| || | || |||||| Sbjct 16692 GGTAGCACAGGAGTTCATGACACTGTGGTCAACCAGCTACTGTCCAAGATCGATGGTGTT 16633 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACT 19698 | |||||||| || || | || ||||| ||| || Sbjct 16632 GAGCAACTGAACAACATCCTCGTCATTGGTATGTCT 16597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395677081588210