Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq8072 149 2e-30 seq77463 127 6e-24 seq111151 123 8e-23 seq3188 113 1e-19 seq1632 98.7 3e-15 seq11875 93.3 1e-13 seq22077 86.0 2e-11 seq6838 86.0 2e-11 seq8 86.0 2e-11 seq186778 84.2 7e-11 seq7490 84.2 7e-11 >seq8072 Length=1211495 Score = 149 bits (164), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | ||| | || |||||||| || ||||| ||| | || || || ||||| Sbjct 11720 ACCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGA 11661 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCA-AAGATTAGACGTTGCTGATCAGGAG 140628 || || || |||||||| || || || ||||| ||||| || | ||||| ||||||| Sbjct 11660 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAG 11601 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 |||||||||| |||||||| || || || || ||||| || || | || | ||||||| Sbjct 11600 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAA 11541 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | || || || || || || || || ||||||||||| Sbjct 11540 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq77463 Length=3863 Score = 127 bits (140), Expect = 6e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || |||||||| || ||||| |||||||| | || | |||||| Sbjct 248 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCT 307 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | |||||||| |||||||| || | ||||| ||||| | || | ||||||||| Sbjct 308 TCCAACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCC 367 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| || || || || ||||| | ||| Sbjct 368 TGGATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTC 427 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || ||||| || || ||||| || |||||| Sbjct 428 TTGCCAGTTAGGGTCTTCACAAAGATTTGCATT 460 >seq111151 Length=252830 Score = 123 bits (136), Expect = 8e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||||||| || || ||||| || || | | |||||| | ||| || |||| ||||| Sbjct 126116 TTTTGAATGTTGTAGTCAGAGAAAGTAAGGCTATCTTCCACTTGCTTACCAGGGAAGATC 126057 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || | |||||||||| |||||||||| |||| |||||||| || | |||| ||| || Sbjct 126056 AGCCTCTGCTGATCAGTAGGAATTCCTCCTTTGTCCTGAATCTTGACCTTTATATTTTCT 125997 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || || || || |||| ||||||||| | | || || || | || || || |||||| Sbjct 125996 ATAGAGTCTGAGGGTTTAACTTCAAGCATGATAGTTTTCCCCCTAAGAGTCTTCACAAAA 125937 Query 140730 ATCTGCAT 140737 ||||| || Sbjct 125936 ATCTGAAT 125929 >seq3188 Length=540008 Score = 113 bits (124), Expect = 1e-19 Identities = 148/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 140533 GATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTT 140592 ||||||| |||||||| |||||||| || || ||| | ||| | ||||| | | Sbjct 280759 GATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAAAGTATGG-----CTTCTTCCTGCT 280813 Query 140593 GTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTT 140652 | || ||||||| | || | | || ||||||||||||||| || | | |||| || | Sbjct 280814 GCTTACCAGCAAGAAGCAGCCTTAGCCAATCAGGAGGAATTCCCTCCTAAACCTGGATCT 280873 Query 140653 TAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGG 140712 | | || |||||| || || | ||| || |||||||| ||||| || | ||||| || Sbjct 280874 TGGTTTCTACATTTTCTATAGCATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCA 280933 Query 140713 TTAGTGTTTTTACAAAAATCTGCAT 140737 | || || |||| ||||||||||| Sbjct 280934 TAAGGGTCTTTATGAAAATCTGCAT 280958 >seq1632 Length=481465 Score = 98.7 bits (108), Expect = 3e-15 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 350168 AAAAATCAGAT--TGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTC 350225 ||||||| ||| ||||||| | ||| | |||||||| ||||| || |||||||| ||| Sbjct 160086 AAAAATCTGATATTGATGAAATTGTTCTTGTTGGTGGATCTACTCGAATTCCAAAGATTC 160145 Query 350226 AACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATG 350285 | ||| | | ||||| || || ||||| || || || | || || || |||| Sbjct 160146 AGCAGCTGGTGAAAGAGTTCTTCAACGGCAAGGAGCCATCCCGTGGCATAAACCCGGATG 160205 Query 350286 AAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | ||||| ||||||||||||||||| ||||| Sbjct 160206 AGGCTGTAGCATATGGTGCTGCTGTCCAGGC 160236 Score = 96.9 bits (106), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| |||||||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 159314 ATGCAGTTGTTACTGTACCAGCCTACTTCAATGATGCCCAGCGGCAAGCAACCAAAGATG 159373 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||||| |||||| || | ||||| | || || || ||||| || Sbjct 159374 CTGGCACCATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 159419 Score = 96.9 bits (106), Expect = 1e-14 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || ||||| ||||||||||| ||||| ||||| ||||| || ||| ||| | Sbjct 160238 CAGCCTGGACAGCAGCACCATATGCTACAGCCTCATCCGGGTTTATGCCACGGGATGGCT 160179 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | ||||| || || || ||| | || || ||||| |||||||||| ||| || |||| Sbjct 160178 CCTTGCCGTTGAAGAACTCTTTCACCAGCTGCTGAATCTTTGGAATTCGAGTAGATCCAC 160119 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | |||||| |||| | ||| | | | || |||| ||| ||||| | Sbjct 160118 CAACAAGAACAATTTCATCAATATCAGATTTTTTCAAATCAGAGTCTTCTAAGACTTTCT 160059 Query 183430 CAACAGGGTCCATAGT 183445 || || | ||| || Sbjct 160058 GGACCGGCTTCATGGT 160043 Score = 84.2 bits (92), Expect = 7e-11 Identities = 124/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 349714 CACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCT 349773 ||| || || || ||||||||||| || ||||| ||| || ||| || || || || Sbjct 159508 CACAGCAGCTGCTATTGCATATGGCCTGGATAA---GAGGGAGGGAGAGAAGAACATCCT 159564 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 | | ||||| | ||||| || || || ||||| || || || || |||| | || | Sbjct 159565 TGTGTTTGACCTGGGTGGCGGAACCTTCGATGTGTCTCTTCTGACCATTGACAATGGTGT 159624 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || ||||| || ||| ||| ||||| ||||| ||||| ||||| |||||| Sbjct 159625 CTTCGAAGTGGTGGCCACTAATGGAGATACTCATCTCGGTGGGGAAGACTTTGAT 159679 >seq11875 Length=615414 Score = 93.3 bits (102), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||| ||||| | ||| | || |||| ||| || ||||||||||| || || || ||||| Sbjct 50186 ACCCCCACGAAGTCTCAACACCAGATAAAG-GTGGACTCTTTTTGGATGTTGTAGTCAGA 50128 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 || || || |||||||| || | || ||||| ||||| || | || ||||||||||| Sbjct 50127 CAAAGTACGGCCATCTTCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGTTGATCAGGAGG 50068 Query 140630 AATTCC 140635 |||||| Sbjct 50067 AATTCC 50062 >seq22077 Length=355463 Score = 86.0 bits (94), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 6/149 (4%) Strand=Plus/Minus Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCT 349720 || ||||||||| || || ||||| ||||| || ||| |||||| ||||||||| ||| Sbjct 1275 AAGGATGCTGGCCAGATAGCTGGGTTGAATGTACTTAGAGTGATTAGTGAACCCACAGCT 1216 Query 349721 GCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTT 349780 || || || || ||||| || || ||| | |||| ||| ||| ||| | | Sbjct 1215 GCTGCCATGGCCTATGGTCTGGACAAATC------CGAAGATAAAGTCATTGCTATATAT 1162 Query 349781 GATTTAGGTGGTGGTACTTTTGATGTATC 349809 |||||||||||||| || |||| || || Sbjct 1161 GATTTAGGTGGTGGAACCCTTGACGTTTC 1133 >seq6838 Length=575710 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 ||||| || || || ||||| || || || |||||||| ||||| || ||||| ||||| Sbjct 406461 TTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGTTGCTTGCCAGCGAAGATC 406402 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCT 140636 || | ||||||||||||||||||||| Sbjct 406401 AGTCTCTGCTGATCAGGAGGAATTCCT 406375 >seq8 Length=2037805 Score = 86.0 bits (94), Expect = 2e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 378237 ACCAGTTTGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATG 378296 |||||| | | ||| ||||| || || || || | ||| | || || ||||| ||||| Sbjct 622912 ACCAGTCTCAGCAGTCTTAACGGCTGTGTCGATGAGACCTTCTCGTCCTCCCATGGCATG 622853 Query 378297 GAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGC 378356 |||||| |||||||| || || || ||| | | |||| |||| | ||| |||| Sbjct 622852 GAAGAAGAATTCAGTGGGTGTGAGACCAGCCAAGTATGAGTTCTCTACAAAGCCTCGACT 622793 Query 378357 GCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGG 378416 | || || ||||| || || | ||||| | || |||| || ||| ||| | || Sbjct 622792 CTCAGGACCATAATCATCCTTGATAAAGTGAGGAAGAGTCCGATGCTTAAATCCAAAGGG 622733 Query 378417 AATTCGTTTTCCATCAACATTCTGTTGACCAA 378448 || ||||| || || || ||||| || |||| Sbjct 622732 GATCCGTTTGCCCTCCACGTTCTGCTGCCCAA 622701 >seq186778 Length=737 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || ||||||||||| |||| ||||| || || || ||||| || || | | |||||| Sbjct 403 ACCAGATGAAGAGTGAACTCCTTTTGGATGTTGTAGTCAGACAAAGTACAGCAATCTTCC 462 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || ||| ||| | || | |||||||| |||||||||||||| ||||| Sbjct 463 AGCTGCTTGTCAGTGAAGTTCAGCCTCTGCTGATCGGGAGGAATTCCTTCCTTATC 518 >seq7490 Length=964078 Score = 84.2 bits (92), Expect = 7e-11 Identities = 191/281 (68%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 349646 CAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGT-TAAATGTTCTAAGAATGAT 349704 |||| | || |||| |||||||||| | || | |||| | ||||| || | || || Sbjct 658705 CAGCAGTATGTAACACAAGATGCTGGAACTATCGGGGGGCCTCAATGTCCTTA--ATTAT 658762 Query 349705 TAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaa 349764 |||||||| |||||| || | || ||| | | ||||| | | || |||| Sbjct 658763 CAATGAACC---TGCTGCTGCTTTGGCTTATAGCTTAGATAAGAAGGTTGGAGGTGAAAG 658819 Query 349765 aaaTAT-TCTTATTT-TTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTT 349822 ||| | || || | || |||| || ||||||||||||||||| ||| | || || || Sbjct 658820 GAATGTGTCAAATCTATTTATTTGGGAGGTGGTACTTTTGATGTGTCAATCCTCACCATT 658879 Query 349823 GAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGAT 349882 || || |||| | || | || ||| | || || || ||||| || | ||| ||||||| Sbjct 658880 GAGGATGGAACTCTTTAGGTCAAATCTACAGCAGGAGATACCCACTTGGGTAGAGAAGA- 658938 Query 349883 TTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAA 349923 || ||||| | || | |||||| || || ||||| Sbjct 658939 -CTGGTAATCTAGTGGTCTACCATTTTATTGTTGAGTTTAA 658978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1508124691465326