Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq15565 87.8 2e-12 seq53448 86.0 7e-12 >seq15565 Length=372695 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| |||||||| ||||||||||||||||| || | || |||||||| Sbjct 366453 GCCTTTGC-TGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCT 366511 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 ||| || || || || ||||| ||||| | || ||||||||||| ||| | | || || Sbjct 366512 CAAGAAACGGGGACTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATGA 366571 Query 60110 GG 60111 || Sbjct 366572 GG 366573 >seq53448 Length=237101 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 || ||||| ||||||||| | ||||||||||| || || |||||| |||||||| Sbjct 207143 GCCTTTGCTGCCGTGGAAGGCGTTTTCTTCTCTGGGTCCTTTGCTGCTATCTTCTGGCTG 207202 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || ||| | ||||||||||| || || | |||||| || || ||||| Sbjct 207203 AAGAAGAGAGGCCTCATGCCCGGACTCACTTTCTCAAATGAACTGAT 207249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546006783192480