Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8072 141 1e-28 seq9155 140 4e-28 seq77463 114 1e-20 seq1650 113 5e-20 seq27113 89.7 6e-13 seq850 87.8 2e-12 >seq8072 Length=1211495 Score = 141 bits (156), Expect = 1e-28 Identities = 169/228 (74%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| ||||| || || || || || || |||||||| | Sbjct 11492 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTG 11551 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 11552 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 11611 Query 27526 CAGCGTCTAAT-TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || || ||||| ||||| || || |||| ||||| | | ||||| || Sbjct 11612 CAGAGGCTGATCTTGCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 11671 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| |||||| ||||| |||||||| || ||| | ||||||||||| Sbjct 11672 CATCCCAAAGGAGTCCACCCTTCATCTGGTGTTGAGACTTCGCGGTGG 11719 >seq9155 Length=358325 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| |||||||||||||| || | || Sbjct 307587 ATGCATATCTTTGTGAAGACCCTGACGGGCAAGACCATTACTCTTGAGGTCAAGCCCAGT 307646 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || |||||||| || || || || |||||| Sbjct 307647 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCAG 307706 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||| || ||||| || ||||||| | ||||| | ||| | || Sbjct 307707 CAAAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCAGACCCTGTCTGACCACAAC 307766 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| | || || || | ||||| | ||||| Sbjct 307767 ATCCAGAAAGAGCCCACTTTGCACCTGGTGCTTCGTCTGCATGGTGG 307813 >seq77463 Length=3863 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || || |||||||| || || || ||||| || | | Sbjct 460 AATGCAAATCTTTGTGAAGACCCTAACTGGCAAGACCATCACACTGGAGGTGGATCCCAG 401 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | ||| | ||||| || || ||||| || |||| || | || ||||| Sbjct 400 TGACACCATGGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCGCCCCTGACCA 341 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || | || |||| | || || | || || || Sbjct 340 GCAGTGACTCATCTTTGCAGGAAAACAGTTGGAAGATGGCCACACTCTCTCTGATTACAA 281 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| || || ||||| || || || ||| | | ||| | ||||| Sbjct 280 TATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCATCTCAGGGGTGG 233 >seq1650 Length=1266344 Score = 113 bits (124), Expect = 5e-20 Identities = 128/168 (76%), Gaps = 3/168 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||||||||| ||| | || Sbjct 466012 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTAGAGCCCAGT 465953 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || |||||| | || | || || |||||| Sbjct 465952 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGAAAGGCAACCCACCTGACCAG 465893 Query 27526 CAGCGTCTAATT-TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT 27572 ||| | || ||| |||||| | ||||| || ||||||| | | ||||| Sbjct 465892 CAGAGGCTGATTATTTGCT-GCAAGCAGCTGGAGGATGCT-GGACCCT 465847 >seq27113 Length=56823 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| |||||||||||||| ||| | || Sbjct 19427 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATTACTCTTGAGGTCGAGCCCAGT 19486 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | ||||| || || || |||||||| || Sbjct 19487 GACACCATAGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGG 19530 >seq850 Length=2098092 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| |||| | ||| |||||| ||||| || ||||| ||| | | Sbjct 356515 AATGCAAATCTTTGTGAAGAGCCAGACCCACAAGACCATTACCCTAGAGGTGGAGCCCAG 356456 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 | || ||||| ||| |||||| || || ||||| || ||||| || || || ||||| Sbjct 356455 TAATGCCATTGAGAATGTGAAGGTCAAGATCCAGGATAAAGAGGGCATACC-CCCGACCA 356397 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||| | ||| ||||| || ||| Sbjct 356396 ACAGAAGCAAATCTTTGCAGGCAAG 356372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567692375851040