Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq6848 163 4e-35 >seq6848 Length=162012 Score = 163 bits (180), Expect = 4e-35 Identities = 286/413 (69%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 ||||||||| ||| ||||| || ||||| ||||| ||||| || ||| | || ||||| Sbjct 128981 GCCCCTGAGTAAGGAGGAGGTAGACTTTCCAATCGCGTACTCCATAGTGGTTCATCACAA 128922 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| | ||| | ||||||||||||||||| || ||||| | || ||| | Sbjct 128921 GATTGAAATGCTTGAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTTTATTGCAT 128862 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 ||||||||| || | | || | || | | | || | ||| ||| || Sbjct 128861 TCACGTGGACAAAAAAGCAGAGGAGCCCTTTTTAGCTGCGG--TAACGGGCATTGCGTCC 128804 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||||| ||||| ||||| || |||| | |||| || || | ||||||||| Sbjct 128803 TGCTTGAAGAACGTCTTTGTGGCCAGCCAGCTGGAGAACGTCGTCTATGCGTCCTGGAGT 128744 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || || ||||| ||||||| ||||||| |||| || || | | || |||| | Sbjct 128743 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACTTGTACAGCATGAGTGCAAACTGGAAG 128684 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || ||||||| ||||| ||||||||||| | || ||||||||||| || || || Sbjct 128683 TACTTGATCAACCTCTGCGGTATGGACTTCCCTATTAAAACCAACCTGGAAATTGTCAGG 128624 Query 14028 GCGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCC 14077 ||| ||| | |||||||| | ||| |||||| | |||| ||||| Sbjct 128623 AAGCTCAAGTCATTCCTGGGCG---AAAACAGCCTGGAAACCGAGAAGATGCC 128574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655715241233920