Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq9155 114 1e-20 >seq9155 Length=358325 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || || ||||| |||||| | ||||||||||| || | || Sbjct 307586 CATGCATATCTTTGTGAAGACCCTGACGGGCAAGACCATTACTCTTGAGGTCAAGCCCAG 307645 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| ||||| || || |||||||| |||||||| ||||| || || Sbjct 307646 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGACCA 307705 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || | | |||| |||||||| || |||| || | |||| | || || |||| Sbjct 307706 GCAAAGACTGATATTTGCCGGCAAGCAGCTGGAGGATGGCCAGACCCTGTCTGACCACAA 307765 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||| | || || || |||| | ||| ||| |||||||| Sbjct 307766 CATCCAGAAAGAGCCCACTTTGCACCTGGTGCTTCGTCTGCATGGTGGCAT 307816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432974994484106