Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq303837 156 4e-33 >seq303837 Length=344 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || ||||||||||| ||||| || | ||| Sbjct 96 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 155 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || ||||| || | || ||||||||||| ||||||||||||||||| || |||||||| Sbjct 156 ATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCTACATAGAATTGA 215 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| ||||| || || || |||||||| || ||||| Sbjct 216 CAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATC 256 Score = 156 bits (172), Expect = 4e-33 Identities = 131/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| |||||||| || |||||| Sbjct 256 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAAT 197 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||||||||| ||||||||||| || | || ||||| ||||| | || ||||| ||| Sbjct 196 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 137 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 |||||||| || || || |||||||| |||||||| || || Sbjct 136 AACATTGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 96 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446204640246240