Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq8072 172 1e-37 seq9155 147 5e-30 seq77463 134 3e-26 seq1650 105 2e-17 seq11124 104 5e-17 seq10009 104 5e-17 seq11875 100 7e-16 seq6003 95.1 3e-14 seq186778 89.7 1e-12 seq65591 89.7 1e-12 seq4504 87.8 4e-12 seq850 87.8 4e-12 >seq8072 Length=1211495 Score = 172 bits (190), Expect = 1e-37 Identities = 172/222 (77%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || || ||||| |||||||| ||| ||||||| || || | | || Sbjct 11713 CGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTA 11654 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCG-AAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||||||||||| ||| ||||| || | || || |||||||||| ||| Sbjct 11653 CGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCC 11594 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || ||||| || |||||||||||| Sbjct 11593 TTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAG 11534 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || ||||| || || | |||||| Sbjct 11533 GGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq9155 Length=358325 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| | ||||| |||||| |||||||| | || | |||||| ||||| Sbjct 307798 AGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCC 307739 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || || | ||| |||||||| || | ||||||||||| Sbjct 307738 TCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 307679 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||| || || || || ||||||||| | |||| ||||| ||||| || | Sbjct 307678 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTT--GACCTCAAGAGTAATGG 307621 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| || ||||| ||||| | ||||| Sbjct 307620 TCTTGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq77463 Length=3863 Score = 134 bits (148), Expect = 3e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| ||||| || ||||| | || || |||||| Sbjct 248 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCT 307 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAG-GAACTCCTTCCTTGTC 211021 |||| ||| || ||||| ||||| || | || |||||||| | || ||| || || || Sbjct 308 TCCAACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCC-TCTTTATC 366 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || || || || ||||||||| | || ||||| || ||||| || Sbjct 367 CTGGATCTTGGCCTTGACATTCTCCATGGTGTCACTGGGATCCACCTCCAGTGTGATGGT 426 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| || || || ||||| ||||| | |||||||| Sbjct 427 CTTGCCAGTTAGGGTCTTCACAAAGATTTGCATTTT 462 >seq1650 Length=1266344 Score = 105 bits (116), Expect = 2e-17 Identities = 138/187 (74%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 210932 GATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA-GATAAGGC 210990 |||||| || | | ||||||| | ||| |||||||||||| | || || || || | Sbjct 465831 GATGTTGTAGTTGGACAGGGTCCAGC-ATCCTCCAGCTGCTTG-CAGCAAATAATCAGCC 465888 Query 210991 GTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGG 211050 || |||||||| || |||| |||||| |||||||| || || || ||||||| Sbjct 465889 TCTGCTGGTCAGGTGGGTTGCCTTTCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGG 465948 Query 211051 TGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCT 211110 ||||| | || ||||| |||||||| ||||| ||||| || ||||| ||||| | || Sbjct 465949 TGTCACTGGGCTCTACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCT 466008 Query 211111 GCATTTT 211117 |||| || Sbjct 466009 GCATGTT 466015 >seq11124 Length=316893 Score = 104 bits (114), Expect = 5e-17 Identities = 157/222 (71%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||| |||| ||||| ||||| ||||| | ||| || ||||| Sbjct 73973 AGGACCAGGTGCAGGGTGAACTCCTTTTGCATGTTGTAATCAGAAAGAGTGTGGTCATCT 73914 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTC-----AGGAGG--AACTCCTTC 211015 ||||||||||||||||| || || || | || || || | | || | || || Sbjct 73913 TCCAGCTGCTTGCCTGCAAAAATGAGTCCCTGCTGCTCTGTGTATGGGGCATATGCCCTC 73854 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 | ||||||| ||| | |||||||| |||||||||| | ||| |||| || || Sbjct 73853 TTAATCCTGGACCTTGTCTTTCACGT----GATGGTGTCACTGGGTTCTGCCTCTAGGGT 73798 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| || || | ||||| ||||| | ||| |||| Sbjct 73797 GATGGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCCTTTT 73756 >seq10009 Length=301806 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 210904 GGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTT 210963 |||| ||||| || ||| ||| || ||||| || || || | | ||| | |||||| Sbjct 118471 GGACCAGGTGCAGGGTGAACT--TTCTGGATCTTTTAGTCAGACATGGTGCAGACATCTT 118414 Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 ||||||||||||||| ||||| | || |||||| |||| | | ||||||| Sbjct 118413 CCAGCTGCTTGCCTGAAAAGATTGACCTGTGCTGGTCA-GAGGGTGTGCCGTTTTGTCCT 118355 Query 211024 GGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 | |||||| || ||||| || || ||||| | ||||||||| |||||||| |||| Sbjct 118354 GAATCTTTGCCTTGACGTTCTCAATAGTGTCTCTGGGTTCAACCTCCAGAGTGATGGTCT 118295 Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | | || || |||| || ||| | |||||| Sbjct 118294 TGCTTGTCAGGGTCTGTATAAAGATCTGCAT 118264 >seq11875 Length=615414 Score = 100 bits (110), Expect = 7e-16 Identities = 95/120 (79%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || || | ||| |||||||||||||||||||| || || | | || Sbjct 50180 ACGAAGTCTCAACACCAGATAAAG-GTGGACTCTTTTTGGATGTTGTAGTCAGACAAAGT 50122 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||||| |||||||| || | ||||| |||||||||| ||| Sbjct 50121 ACGGCCATCTTCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGTTGATCAGGAGGAATTCC 50062 >seq6003 Length=190268 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || |||||||| |||||||| |||| | || || | |||||| Sbjct 5758 AGGACCACGTGCAGGGTAGACTCTTTCTGGATGTTGTAATTGGAGAGAGTGCGGCCATCT 5699 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || || || || | || || | ||| || || || ||| Sbjct 5698 TCCAGCTGCTTGCCAGCAAACAT---GC-TGGTCGGGGGGTGGGAGTGCCCTCTTTATCC 5643 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||| || ||||| ||| Sbjct 5642 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCATCAGGGTGATGGTC 5583 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || | || || | ||| || || | |||||||| Sbjct 5582 TTGCTGGTCAGGGACTTCACGAAGATTTGCATTTT 5548 >seq186778 Length=737 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 ||||||| | || || ||||||||| |||| ||||||||||| || || | | || | Sbjct 392 GAAGTCTCAACACCAGATGAAGAGTGAACTCCTTTTGGATGTTGTAGTCAGACAAAGTAC 451 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 | |||||||||||||||| | | |||| | || | || || || ||||||| ||||| Sbjct 452 AGCAATCTTCCAGCTGCTTGTCAGTGAAGTTCAGCCTCTGCTGATCGGGAGGAATTCCTT 511 Query 211015 CCTTGTC 211021 |||| || Sbjct 512 CCTTATC 518 >seq65591 Length=16179 Score = 89.7 bits (98), Expect = 1e-12 Identities = 110/150 (73%), Gaps = 3/150 (2%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAA---GATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||||||||||||||||||| ||||| ||| || | || || |||| ||||| || | Sbjct 14973 CCATCTTCCAGCTGCTTGCCAGCGAAGATGATCAGCCTCTGCTGATCAGAAGGAATTCTT 14914 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 | ||| | ||||||||| || || ||||| || || || || |||||||| | | Sbjct 14913 TTCTTATTCTGGATCTTGGTCTTGACATTTTCTATAGTATCCAAGGGTTCAACCTGGGGC 14854 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||| || || ||| | || ||||| ||| Sbjct 14853 TTGATGGTTTTCCCCATAAGGGTCTTCACA 14824 >seq4504 Length=1961787 Score = 87.8 bits (96), Expect = 4e-12 Identities = 110/149 (74%), Gaps = 3/149 (2%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| || ||||| ||||| | ||| || |||||| Sbjct 807371 AGGACCAGGTGCAGGGTTGACTCTTTCTGAATGTTGTAATCAGAAAGAGTGTGACCATCT 807430 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTT--GGTCAG-GAGGAACTCCTTCCTTG 211019 ||||||||||||||||| ||||| || | || | || || || | | || || || Sbjct 807431 TCCAGCTGCTTGCCTGCAAAGATGAGTCTCTGCTAGGGGGAGTGAAGGATGCCCTCTTTA 807490 Query 211020 TCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 | ||||||||| ||||| || ||||| Sbjct 807491 TGCTGGATCTTAGCCTTCACATTCTCGAT 807519 >seq850 Length=2098092 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| || ||||| | ||| | ||| || ||| || Sbjct 356304 AGGACTAGGTGCAGGGTGGATTCTTTCTGAATGTTGTGATCAGAAAGAGTGTAGCCACCT 356363 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||| || ||||||||| ||||| | |||||||| || || | || || || ||| Sbjct 356364 TCCGACTCCTTGCCTGCAAAGATTTGCTTCTGTTGGTCGGG-GGTATGCCCTCTTTATCC 356422 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||| | | | || ||||| || || || ||| Sbjct 356423 TGGATCTTGACCTTCACATTCTCAATGGCATTACTGGGCTCCACCTCTAGGGTAATGGTC 356482 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || | |||| ||||| | |||||||| Sbjct 356483 TTGTGGGTCTGGCTCTTCACAAAGATTTGCATTTT 356517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153697855859330