Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8072 98.7 7e-16 >seq8072 Length=1211495 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| ||||| ||||| ||||| ||||| || | Sbjct 11492 ATGCAGATTTTCGTGAAGACCCTTACGGGGAAAACCATCACCCTCGAGGTTGAACCCTTG 11551 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| | || || || || || ||||| | || || || || Sbjct 11552 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAGCAG 11611 Query 23731 CAGCGTTTAATATT-TGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || ||||| || |||||||| | || ||||| || ||||| Sbjct 11612 CAGAGGCTGATCTTGCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAA 11671 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||| | ||| |||||||| | ||| | || || || Sbjct 11672 CATCCCAAAGGAGTCCACCCTTCATCTGGTGTTGAG 11707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336496749518936