Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq9155 104 6e-17 seq11875 91.5 3e-13 seq6003 86.0 1e-11 >seq9155 Length=358325 Score = 104 bits (114), Expect = 6e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | ||||| ||||| |||| |||| || | || || ||||| Sbjct 307798 AGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCC 307739 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || || || |||| ||| ||||| || || || |||||||||||| Sbjct 307738 TCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 307679 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || |||||||| || | || || | || || ||| Sbjct 307678 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGTC 307619 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 307618 TTGCCCGTCA 307609 >seq11875 Length=615414 Score = 91.5 bits (100), Expect = 3e-13 Identities = 93/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || | || ||||| |||||||||| ||||| || | |||||| Sbjct 50180 ACGAAGTCTCAACACCAGATAAAG-GTGGACTCTTTTTGGATGTTGTAGTCAGACAAAGT 50122 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| ||| |||| ||||||||||| || | ||||| || || ||||| || Sbjct 50121 ACGGCCATCTTCCAGCGGCTTGCCAGCGAAGATCAGCCTCTGTTGATCAGGAGGAATTCC 50062 >seq6003 Length=190268 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/219 (68%), Gaps = 12/219 (5%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || || ||||| |||| ||||||| || | ||| | |||||| Sbjct 5758 AGGACCACGTGCAGGGTAGACTCTTTCTGGATGTTGTAATTGGAGAGAGTGCGGCCATCT 5699 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG----AATACCTTCCTT 225617 || |||||||| ||||| || || | |||||||| || | | || || || Sbjct 5698 TCCAGCTGCTTGCCAGCAAACAT--------GCTGGTCGGGGGGTGGGAGTGCCCTCTTT 5647 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 || |||||||| ||| ||| ||||||||||| || ||||| | ||||| Sbjct 5646 ATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCATCAGGGTGAT 5587 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||| |||| | || | ||| | ||||||||| Sbjct 5586 GGTCTTGCTGGTCAGGGACTTCACGAAGATTTGCATTTT 5548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186919997105948