Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq303837 149 5e-31 seq1985 91.5 1e-13 >seq303837 Length=344 Score = 149 bits (164), Expect = 5e-31 Identities = 134/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 83 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 142 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCC-GTCGC 29831 ||| || || ||||| || ||||||||||||||||||||||| || ||||| || |||| Sbjct 143 CACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC 202 Query 29832 TCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | || || || ||||| | ||||||||| ||||| || ||||| || Sbjct 203 T-ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAG 247 >seq1985 Length=848755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || ||||| |||||||| |||| || | |||||| | | ||||| |||||| || || Sbjct 212392 TTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGGA 212333 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || || | ||||| ||||||| |||||| |||||| Sbjct 212332 ATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 212285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404345310234412