Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq15565 89.7 4e-13 seq53448 82.4 6e-11 >seq15565 Length=372695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || || ||||||||||||||||| ||||| || ||| Sbjct 365196 TCTTTAATGTAAGTGTCAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCA 365137 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | || ||||| || |||||||| Sbjct 365136 ATTTGGAAGCCATAGAAACAGCGGGCCTCTGTGACCTGAACTTC 365093 >seq53448 Length=237101 Score = 82.4 bits (90), Expect = 6e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4369 CTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTC 4428 ||||||| |||| |||||||||||| || |||||||| |||| || | ||||| |||| Sbjct 215989 CTACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAGAACACAGTTCATTC 215930 Query 4429 CAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTG 4468 |||| | | ||||| | || | |||||||||||| || Sbjct 215929 CAATAAGGCCAACAGGCAAGGCTTCTGTCAAAAACTCCTG 215890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425138227681586