Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq303837 136 3e-27 >seq303837 Length=344 Score = 136 bits (150), Expect = 3e-27 Identities = 132/167 (79%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 27207 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 27266 ||| || |||| ||| || |||||||| ||||| || | |||||||| ||||| ||||| Sbjct 83 TAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGG 142 Query 27267 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCA-TCGC 27325 || || || ||||| || || ||||||||||||||||| || || ||||| ||| |||| Sbjct 143 CACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGC 202 Query 27326 TTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 ||| || || ||||| | ||| ||||| ||||| || ||||| ||| Sbjct 203 -TACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 367853373761702