Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15565 168 9e-37 seq5156 105 9e-18 seq174228 102 1e-16 >seq15565 Length=372695 Score = 168 bits (186), Expect = 9e-37 Identities = 171/222 (77%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||||| |||||||| || || ||||| ||||| ||||| ||| Sbjct 366571 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366512 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| ||||||| || ||||| ||||| ||||| || ||||| || || ||||| || Sbjct 366511 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGGCC 366452 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATCCACCGTTGTGCCCAATCAGCC 48341 || | ||||| || |||| || |||| ||||| || | ||||| || ||| Sbjct 366451 ACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGGCC 366392 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 ||||| || |||||||||||||| || |||||||| |||||| Sbjct 366391 TTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGA 366350 >seq5156 Length=389234 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| ||||| || ||| ||| | || || || || || || | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | |||| |||||||| | ||| || | | || || | ||||| |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 105 bits (116), Expect = 9e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 236487 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 236546 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 236547 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 236606 Query 77247 TTTCTGAGACCAT 77259 || || | ||||| Sbjct 236607 TTCCTTATACCAT 236619 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| || || |||||||| || |||||||| || ||| Sbjct 250542 GTCCCAGCATTGAACAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 250601 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| || | || || || || ||||| || || | ||| | ||||||| Sbjct 250602 TATGTTTCAATTGCAGCGTCGATATCGTCTTTGTGAATCCCCACAGATACCCTCATCAAC 250661 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 250662 ATATGCTGTGGTCTTTCAGCC 250682 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| ||||||||||| ||||||| ||||| || |||||||| |||||||||||| Sbjct 243368 TCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAATGAC 243427 Query 77985 CAGTC 77989 ||||| Sbjct 243428 CAGTC 243432 >seq174228 Length=3070 Score = 102 bits (112), Expect = 1e-16 Identities = 176/257 (68%), Gaps = 18/257 (7%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||||| || | ||| |||||| ||||| | |||||||||||||| || Sbjct 1926 CAGGCAAAGTCACAGTGTAAACCCAGATCTCTGCTAATAAGCTCGTTAGAAAATGTAAGG 1867 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 | ||||| ||||| |||| |||||||| |||||| ||| ||||| |||| |||| Sbjct 1866 TCAGGCATCAGTCCCGGTTTCTTGAGCCATTATATTGACGCAAAAGAGCCAG---AGAAG 1810 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GT 48317 | | ||| | || ||||| || || || ||||| || | || || | || Sbjct 1809 GTCGCATCTGCAGCAGCAAAGGCCACAAATCATTCTCCATAGGTAGCCTCTTGGTCCCCA 1750 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTC------------TTCTTTACACAAGGCATTGTT 48365 ||||| || | ||||| || ||| || || |||||||||||||| Sbjct 1749 ATCCAACGCAGGGCCCAGGGAGTTTTCTGGGGTTTTTTTTTTTTCACACAAGGCATTGTC 1690 Query 48366 TCTATAGCATTAAAGAG 48382 || |||||||| ||||| Sbjct 1689 TCAATAGCATTGAAGAG 1673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691479905506880