Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15565 159 5e-34 seq5156 113 6e-20 seq53448 98.7 1e-15 seq174228 96.9 5e-15 >seq15565 Length=372695 Score = 159 bits (176), Expect = 5e-34 Identities = 169/222 (76%), Gaps = 3/222 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| ||||| | ||||| |||||||| || |||||||| ||||| || || ||| Sbjct 366571 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 366512 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| ||||| ||||| || ||||| ||||| || || || Sbjct 366511 AGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGGCC 366452 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCC 46830 |||| | ||||| || |||| || || | ||||| | | ||||| || ||| Sbjct 366451 ACAACCCGTTCTCCATAGGTGGCCTCTTTGTCCCCGATCCAGCGCAGGGCCCAGTCGGCC 366392 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 || || || |||||||||||||| || |||||||| |||||| Sbjct 366391 TTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGA 366350 >seq5156 Length=389234 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| |||||||| || ||||| ||||| || |||||||| || ||| Sbjct 250542 GTCCCAGCATTGAACAGAGTAGGAGAGGCGTGAGTAAACCACTTCTCAGAAAGCAGGTTG 250601 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 250602 TATGTTTCAATTGCAGCGTCGATATCGTCTTTGTGAATCCCCACAGATACCCTCATCAAC 250661 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 250662 ATATGCTGTGGTCTTTC 250678 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 236487 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 236546 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 236547 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 236606 Query 75842 TTTCTGAGACCAT 75854 || || | ||||| Sbjct 236607 TTCCTTATACCAT 236619 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| ||||| || ||| ||| | || || || || || || | Sbjct 233112 TCCAGCCGTAGAAGTGCATACTTGTGAGCTTGCCATAGTTGGGCTCAGCAATGTGGATGT 233171 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 233172 TTAAAGACTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 233231 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | |||| |||||||| | ||| || | | || || | ||||| |||| Sbjct 233232 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 233282 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 255806 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATG 255865 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | |||||| |||| || ||| | || || || | |||||| | | Sbjct 255866 GCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCAGT 255925 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || ||||| | || || ||||| || |||||||||| Sbjct 255926 TCCACTGTGGTGACTCCACTGTACAGGCCTTGGATTACTTTCATGG 255971 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 243358 ATATAACTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 243417 Query 76570 CATCAATGACCACTC 76584 |||||||||||| || Sbjct 243418 CATCAATGACCAGTC 243432 >seq53448 Length=237101 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| || |||||||| ||||||| ||||| ||||||||| ||||| |||||| | Sbjct 191227 TACCTCTTCTGCGGTCCAGAAAGACGCCTGTGCTTGTTTATACATCTTCCAAATATCAGG 191168 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||||||||| |||||||| Sbjct 191167 GTACTGGATCGGAAAGATAACAAA 191144 >seq174228 Length=3070 Score = 96.9 bits (106), Expect = 5e-15 Identities = 175/257 (68%), Gaps = 18/257 (7%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| ||||| || | || |||||| ||||| | |||||||||||||| || Sbjct 1926 CAGGCAAAGTCACAGTGTAAACCCAGATCTCTGCTAATAAGCTCGTTAGAAAATGTAAGG 1867 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 ||||||| ||||| | || |||||||| |||| | ||| ||||| |||| |||| Sbjct 1866 TCAGGCATCAGTCCCGGTTTCTTGAGCCATTATATTGACGCAAAAGAGCCAG---AGAAG 1810 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GA 46806 | | ||| |||| || || || |||| || ||||| || | || || | | | Sbjct 1809 GTCGCATCTGCAGCAGCAAAGGCCACAAATCATTCTCCATAGGTAGCCTCTTGGTCCCCA 1750 Query 46807 ATCCACCTTTGAGCCCAATCAG------------CCTTTTTCTTTACACAAGGCATTGTT 46854 ||||| | | ||||| || ||||| || |||||||||||||| Sbjct 1749 ATCCAACGCAGGGCCCAGGGAGTTTTCTGGGGTTTTTTTTTTTTCACACAAGGCATTGTC 1690 Query 46855 TCTATAGCATTAAAGAG 46871 || |||||||| ||||| Sbjct 1689 TCAATAGCATTGAAGAG 1673 Score = 87.8 bits (96), Expect = 3e-12 Identities = 183/272 (67%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 46288 AAGTCGACATCTAAAGAAAAATGATTATCTTCT---TGTGACATAACTCCCATTTTTTGG 46344 ||||| |||| |||| |||| ||| ||| || | ||| ||||| ||||| | || Sbjct 2351 AAGTCAGCATCCAAAGTAAAAGAATTCTCTGCTGTATTTGAAATAACCCCCATCCTCTGA 2292 Query 46345 TATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 46404 || || || | | ||| | || || || || || ||||| | ||| |||||||||| Sbjct 2291 TACTCGCCCATTTGCTTCACAAAGAAGTTGGTCTTCCCTTCTAGTGAATTATTTTCCATT 2232 Query 46405 AAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATCAGTCTA 46464 || ||||||||||| || | ||||| || | || |||| || || || || Sbjct 2231 AAGTCAAACGGATTTTCTACTCTTTAAATCTTGCTGAACCCTAGCTCCAGGATAAGCCTG 2172 Query 46465 TCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGACC 46524 || || | |||||| || ||| |||||| | || |||| || ||||| || || Sbjct 2171 TCCGCCATGAATTCGATGTACTGTTTCATTAGGGTGCAGCTCATCCCGATGAGCTTCACA 2112 Query 46525 GGTAGAGCCTCCGTAAGAAACTCTTGTTCAAT 46556 || || ||||| |||||| | || || || Sbjct 2111 GGCAGGGCCTCTAGGAGAAACCCCTGCTCTAT 2080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709661656813440