Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq8072 122 2e-22 seq9155 100 7e-16 seq1650 91.5 3e-13 >seq8072 Length=1211495 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || |||||||| || ||||| ||| |||||||||| || | ||||| | Sbjct 11710 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGG 11651 Query 151947 CCATCTTCTAGGCTTTTCCCGGCG-AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || ||| ||||| ||||||||||| || | | |||||||| Sbjct 11650 CCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTC 11591 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | |||| |||| | || || || || || Sbjct 11590 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGT 11531 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || ||||||||||| | |||||| Sbjct 11530 GATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq9155 Length=358325 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || | ||| | |||||| |||||||||| || | | || ||||| Sbjct 307798 AGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGCCATCC 307739 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| || || || || |||||||| | | ||| |||||||| ||| Sbjct 307738 TCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTCT 307679 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| || || ||||||||||| Sbjct 307678 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTTGACCTCAAGAGTAATG 307622 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || |||||||| |||| ||||| Sbjct 307621 GTCTTGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq1650 Length=1266344 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/137 (75%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 151974 ATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTC 152033 || |||||||||||||| | | | | |||| ||| ||||| || || |||||| || Sbjct 465882 ATCAGCCTCTGCTGGTCAGGTGGGTTGCCTTTCTTGTCTTGGATCTTGGCCTTGACATTC 465941 Query 152034 TCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTC 152090 || | | |||| ||| |||||| |||||||| || || |||||||| || |||||| Sbjct 465942 TCGATGGTGTC---ACTGGGCTCTACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTC 465998 Query 152091 ACGAAGACCTGCATTTT 152107 || |||| |||||| || Sbjct 465999 ACAAAGATCTGCATGTT 466015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1148391740691382