Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9155 156 9e-33 seq8072 131 4e-25 seq16591 98.7 2e-15 seq170478 89.7 1e-12 seq4742 89.7 1e-12 seq1650 89.7 1e-12 seq11875 87.8 4e-12 seq27431 84.2 5e-11 >seq9155 Length=358325 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||| |||| ||||| ||||| || || ||| ||||| |||||||||| ||||| Sbjct 307813 CCACCATGCAGACGAAGCACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGAC 307754 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||||| || || || |||||||| |||| | ||| |||||| || Sbjct 307753 AGGGTCTGGCCATCCTCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGG 307694 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 || || ||||||||||||||||| || || || | || || ||||| | |||| ||| Sbjct 307693 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTT-GAC 307635 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || ||||| ||||||| ||||| || || || ||||| Sbjct 307634 CTCAAGAGTAATGGTCTTGCCCGTCAGGGTCTTCACAAAGATATGCAT 307587 >seq8072 Length=1211495 Score = 131 bits (144), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || | | |||||||| | ||| || ||| ||||||||||||||| Sbjct 11720 ACCACCGCGAAGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGA 11661 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGC-AAAGATCAAACGTTGTTGGTCACCCG 282990 | || |||||||| || || || || || || ||||||| | || || ||| | Sbjct 11660 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAG 11601 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || ||||| || |||||||| || || || | || ||||||||| | | ||| | Sbjct 11600 GAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAA 11541 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||| ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 11540 CCTCGAGGGTGATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq16591 Length=727689 Score = 98.7 bits (108), Expect = 2e-15 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 44382 TTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCGA 44440 >seq170478 Length=3692 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 1490 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 1548 >seq4742 Length=317547 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 150897 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 150839 >seq1650 Length=1266344 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 282917 GATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACG 282976 ||||||||||| | || || | || |||||| || || || | | || |||| | Sbjct 465831 GATGTTGTAGTTGGACAGGGTCCAGC-ATCCTCCAGCTGCTTGCAGCAAATAATCAGCCT 465889 Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGT 283036 || |||||| || | || | ||||||||||||||| || || || | ||||| || Sbjct 465890 CTGCTGGTCAGGTGGGTTGCCTTTCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGT 465949 Query 283037 GTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 ||| | || || || |||||||| ||||| ||||||| ||||| || || ||||| Sbjct 465950 GTCACTGGGCTCTACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTG 466009 Query 283097 CATTTT 283102 ||| || Sbjct 466010 CATGTT 466015 >seq11875 Length=615414 Score = 87.8 bits (96), Expect = 4e-12 Identities = 155/226 (69%), Gaps = 9/226 (4%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||||||| | ||||| | || ||| ||||| |||||||||||||| | Sbjct 451725 CCACCACGCAGGCGAGGCACCAGGGGCAAGGTGGAGTCTTTCTGGATGTTGTAGTCCAAA 451666 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||| |||| |||| || ||||| | |||||| |||| | | ||| || Sbjct 451665 AGAGTGTGGCCGTCCTTCAGCTGTTTGCTGGCAAATATCAGCCTCTACTGG---GATGGG 451609 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 | || | ||||||||| ||| | || || || | | ||||||||| | | | | Sbjct 451608 ACGCCTTTCTTGTCTTGTATCATGGCCTTGACATTCTGGATAGTGTCACTGGACTTGTCC 451549 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 || ||| ||||||||| ||| | ||| || || ||||||| Sbjct 451548 TCAAGA------GTCTTACCCATCAGGGGCTTCACAAAGATCTGCA 451509 >seq27431 Length=5810 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||| ||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 2363 TTATTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 2421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1041813990472268