Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq8072 125 5e-24 seq77463 96.9 2e-15 seq9155 95.1 9e-15 >seq8072 Length=1211495 Score = 125 bits (138), Expect = 5e-24 Identities = 160/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179 |||||||||||||| ||||| ||| ||||||| |||||||||| || | | || Sbjct 11710 AGTCTCAACACCAGATGAAGGGTGGACTCCTTTGGGATGTTGTAGTCAGACAAAGTACGG 11651 Query 44180 TCGTCGTCCAGCTGCTTCCCGGCA-AAGATCAAACGCTGCTGATCTGAAGGCACACCTTC 44238 | || ||||||||||| || || ||||||| | |||||| || | ||| | ||||| Sbjct 11650 CCATCTTCCAGCTGCTTGCCAGCGCAAGATCAGCCTCTGCTGCTCAGGAGGAATTCCTTC 11591 Query 44239 CTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGT 44298 ||| ||| ||||| ||| | || |||| ||||| || ||| ||||| | || Sbjct 11590 CTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCAAGGGTTCAACCTCGAGGGT 11531 Query 44299 AATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||||||||| || ||||| Sbjct 11530 GATGGTTTTCCCCGTAAGGGTCTTCACGAAAATCTGCAT 11492 >seq77463 Length=3863 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| ||| || ||||| |||||||| | ||| | | | || ||| Sbjct 251 ACCAGGTGCAGGGTGGACTCTTTCTGGATATTGTAATCAGAGAGAGTGTGGCCATCTTCC 310 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | ||| || || |||||||| | | |||||| || | | | | || || ||| Sbjct 311 AACTGTTTTCCTGCAAAGATGAGTCACTGCTGGTCAGGGGCGATGTCCTCTTTATCCTGG 370 Query 44249 ATCTTCTGCTTCA-ATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | || ||| |||||||| || |||||||||| || || ||||| Sbjct 371 ATCTTGGCCTTGACATTCTCC-ATGGTGTCACTGGGATCCACCTCCAGTGTGATGGTCTT 429 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || ||||||||||| ||||||||||| Sbjct 430 GCCAGTTAGGGTCTTCACAAAGATTTGCAT 459 >seq9155 Length=358325 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGT---TGGCGCTCGTC 44184 ||||||||| | ||| ||| || |||||||||| || | || |||| | || Sbjct 307796 CACCAGGTGCAAAGTGGGCTCTTTCTGGATGTTGTGGTCAGACAGGGTCTGGC---CATC 307740 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 ||||||||||| |||||||| |||| | ||||| || | || | |||||||| || Sbjct 307739 CTCCAGCTGCTTGCCGGCAAATATCAGTCTTTGCTGGTCAGGTGGGATGCCTTCCTTGTC 307680 Query 44245 CGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| | | | |||||||| || | ||||| | ||||| || Sbjct 307679 TTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTTGACCTCAAGAGTAATGGT 307620 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 ||| ||||| ||||||||||| ||||| |||||| || Sbjct 307619 CTTGCCCGTCAGGGTCTTCACAAAGATATGCATGCTG 307583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358379168692314