Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq116 150 3e-31 seq3418 129 8e-25 >seq116 Length=588768 Score = 150 bits (166), Expect = 3e-31 Identities = 205/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || ||| |||||| ||||||||||| | ||| | |||| ||| Sbjct 401228 AAGGGACAGCCCTTCACATTGTTACAGATGAGAGACTGAATGGAGGCGGTGTTGATAATC 401169 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| |||||||||||| || || || ||| Sbjct 401168 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGGAGAACAAATGGGA 401109 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 401108 TTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCCCCAAAG 401049 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||||||||||||||||| | | | || ||||||| || |||| | Sbjct 401048 ATAGCATCTGGACGGGGCTTTTCCACCAGCAGGGCAGGATAGAGCTCCATGGCATCGATG 400989 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || || || || ||||| ||||||| Sbjct 400988 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCTG 400943 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 9909 CACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 9968 ||||||| || || | ||||| || || |||| || ||| || || || || | || Sbjct 397297 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCAGCAACAGGCGGAAGTGCTCTGGTGT 397238 Query 9969 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGG 10028 | |||||||| |||||||| ||||||||| || ||| | |||| | ||||||| | | Sbjct 397237 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCACGTTGTAAGTTG 397178 Query 10029 GAGGGCTGTCAATCAAATCGGATCT 10053 | || ||||||||||||| ||||| Sbjct 397177 GCGGACTGTCAATCAAATGTGATCT 397153 >seq3418 Length=466320 Score = 129 bits (142), Expect = 8e-25 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| ||| | || || || ||| || Sbjct 38320 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 38379 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| || |||||||| || |||||||| | ||| | |||||||| || ||||| Sbjct 38380 CCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGAT 38439 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || ||| || || |||||||| | || || | ||| | ||| | || |||| ||| Sbjct 38440 GGAGTTAGGCTGGCACTTTTCCAGAATCAACCCTGGGTAGAACTCTAAGGCATCGATGTC 38499 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| || || | || || || |||||||| ||||||| Sbjct 38500 ACCGTACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 38543 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/253 (70%), Gaps = 16/253 (6%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||||||| ||| || || Sbjct 46321 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCGTCATCCCAGGTGGGGTGC 46380 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACAT- 9350 || | ||||| | |||||||| | |||||| || | |||||||| |||| |||| Sbjct 46381 TCCTCCTTCAGCAGGTCGCACACGCGGTTGTGCTCACGCAGCCAGATCGTGG---ACATG 46437 Query 9351 --CATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG 9408 ||| ||||| || | || ||||| |||| || || || |||| || || ||| Sbjct 46438 ACCATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGC---TTCTCG 46494 Query 9409 GGC---ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCT--TTGACCGAGGGGGGAT 9463 ||| || | || || ||| ||| ||| |||||||| | ||||| || || | Sbjct 46495 GGCGGGACACCCGGTGGGTAGCGCATCATCAC--GGACGTCTGCTCCACCGACGGTGGGT 46552 Query 9464 ACATTTCACCGTC 9476 ||| || ||||| Sbjct 46553 ACACCTCTCCGTC 46565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713585959127680